Summary

The IDRT - Integrated Data Repository Toolkit aims at providing a set of tools to make life with i2b2 easier. Currently, it comprises of four main components:

1. IDRT Architecture and i2b2 Best Practices

While working with i2b2 and the IDRT tool suite, a number of how-to's and recommendations has been developed, covering an overview about the IDRT platform architecture, the level of modifier support in IDRT, best practices for performance optimization and ontology construction.

2. i2b2 Wizard

The i2b2 Wizard is a component for administrating an i2b2 instance: creating projects, creating users, maintaining server parameters and loading the i2b2 demodata provided by Harvard.

3. IDRT Import and Mapping Tool

The IDRT Import and Mapping Tool (IMT) has two missions: first, to load arbitrary source data in common formats like CSV, SQL or CDISC ODM into the i2b2 database and second, to provide a means to curate the i2b2 navigation ontology by creating, renaming and moving concepts or folders (or even mapping concepts to medical terminologies).

4. IDRT i2b2 Web Client Plugin

The IDRT i2b2 Web Client Plugin is an extension to the i2b2 webclient that supports the construct of i2b2 modifiers for export.

Disclaimer

The IDRT project is a collaborative effort from the Department of Medical Informatics, University Medical Center Göttingen, the Chair of Medical Informatics, Friedrich-Alexander-University of Erlangen-Nuremberg, and the Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University Leipzig, Germany. It was funded by a grant form TMF – Technology, Methods, and Infrastructure for Networked Medical Research, Berlin, Germany.

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• 260. i2b2 Wizard quick start

  Jul 10, 2017 • updated by mike mendis • view change
• i2b2 webclient login.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard assign user to project.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard create user.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard create project.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard select networking interface.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard default parameters.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard main menu.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard versions and software selection.png

  Jul 10, 2017 • attached by mike mendis
• i2b2 Wizard OS version warning.png

  Jul 10, 2017 • attached by mike mendis
• 723. Concepts vs. Modifiers

  Jul 09, 2017 • commented by Anonymous
• 331. General

  May 31, 2017 • commented by Anonymous
• 300. IDRT Import and Mapping Tool (IMT)

  Apr 30, 2017 • commented by Anonymous
• 347. Import from Biomaterial Bank

  Apr 20, 2017 • commented by Anonymous
• 347. Import from Biomaterial Bank

  Apr 19, 2017 • commented by Anonymous
• 242. Ubuntu Linux Server Edition

  Apr 10, 2017 • updated by Sebastian Mate • view change
• 713. ETL Optimization

  Mar 12, 2017 • commented by Anonymous
• 713. ETL Optimization

  Mar 10, 2017 • commented by Anonymous
• 713. ETL Optimization

  Mar 10, 2017 • commented by Anonymous
• 713. ETL Optimization

  Mar 09, 2017 • commented by Anonymous
• 220. Preparing the installation

  Nov 23, 2016 • updated by Sebastian Mate • view change
• 500. Download & Contribution

  Nov 07, 2016 • commented by Anonymous
• 500. Download & Contribution

  Nov 06, 2016 • commented by Anonymous
• 600. Demonstration Environment (VM)

  Jun 02, 2016 • commented by Anonymous
• 344. Import §21 Files

  May 06, 2016 • commented by Anonymous

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