i2b2 Sponsored Project - Mapping tools
A set of mapping tools have been created to assist with the assignment, verification, integration, export and import of mappings between two ontologies. In the Software section we provide a sample workbench client / vm image that have been pre-configured with a small subset of ICD-9 to ICD-10 mappings. The mappings presented here were derived from the UMLS GEM (general equivalent mappings).
A graphical UI to assist with mapping one ontology to another
An import tool for importing a small set of terms to be mapped
An integration tool for merging the mapped terms into the target ontology.
This feature replaces the 1.0 Integration command line tool.
An export tool to export the final merged ontology into a delimited i2b2 metadata file.
This tool requires the user to have MANAGER or EDITOR role.
Mapping tools tutorial An overview/tutorial of the mapping tool features.