i2b2 Sponsored Project - Mapping tools

A set of mapping tools have been created to assist with the assignment and/or verification , verification, integration, export and import of mappings between two ontologies. In the Software section we provide a sample workbench client / vm image that have been pre-configured with a small subset of ICD-9 to ICD-10 mappings. The mappings presented here were derived from the UMLS GEM (general equivalent mappings).  

Preliminary Release Candidate Software

Below are a workbench/VM image pair that have been pre-configured with preliminary Release Candidate mapping tool software.

After starting up the VM, you will see a message about how to configure the i2b2workbench.properties file to use this server.  Follow the instructions for step 3.

        3) i2b2Workbench

           Copy the following text into the properties file (i2b2workbench.properties)

           I2b2.1= ....

i2b2Workbench-win-map-1604.zip  Workbench client (1.6.x , windows compatible) pre-configured with Mapping plugins

i2b2vmware_mapping-16.zip          VM image: 1.6.5 hive pre-configured with MAP cell version 1.6

Ontology Mapping Tutorial             Tutorial for the Ontology Mapping tools

Mapping tools version 1.6local Diabetes mappings.

Features

A graphical UI to assist with mapping one ontology to another

An import tool for importing a small set of terms to be mapped

An integration tool for merging the mapped terms into the target ontology.

        This feature replaces the 1.0 Integration command line tool.

An export tool to export the final merged ontology into a delimited i2b2 metadata file.

This tool requires the user to have EDITOR role.

Tutorials

Mapping tools tutorial   An overview/tutorial of the mapping tool features.

Software

See the PCORI Mapping Tools version 1.0 page for all related software.