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i2b2 Sponsored Project - Mapping tools

A set of mapping tools have been created to assist with the assignment, verification, integration, export and import of mappings between two ontologies. In the Software section we provide a sample workbench client / vm image that have been pre-configured with a small subset of local Diabetes mappings.


A graphical UI to assist with mapping one ontology to another

An import tool for importing a small set of terms to be mapped

An integration tool for merging the mapped terms into the target ontology.

        This feature replaces the 1.0 Integration command line tool.

An export tool to export the final merged ontology into a delimited i2b2 metadata file.

This tool requires the user to have EDITOR role.


Mapping tools tutorial   An overview/tutorial of the mapping tool features.


See the PCORI Mapping Tools version 1.0 page for all related software.

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