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Overview of CRC Data Installation

The crcdata tables are part of the Data Repository (CRC) Cell. The following outlines the steps that will be taken during the crcdata installation.

Step 1:   Change your working directory
Step 2:   Configure the database properties for the crcdata
Step 3:   Create the crcdata tables, indexes and sequences
Step 4:   Create the stored procedures
Step 5:   Load sample data into the tables
Step 6:   Create the OMOP views

 

Step 1: Change Working Directory

During the CRC Data Installation we will be working with the crcdata directory. Within this directory are the files we will be editing to define the database properties, create the crcdata tables and load the sample data provided with the i2b2 on OMOP data package.


To change your working directory to the crcdata directory enter the following command:

 

Change Directory Command

CD YOUR_I2B2_DATA_DIR\edu.harvard.i2b2.data\Release_1-7\NewInstall\Crcdata

Important

The change directory command shown above is written for Windows. The command itself is the same for both Linux and Windows with the only exceptions being the slashes in the path name and Linux does not include the "drive".

  • Linux Path: use a forward slash.
  • Windows Path: use a backward slash.


EXAMPLES:
Windows Command:  CD C:\opt\data\edu.harvard.i2b2.data\Release_1-7\NewInstall\Crcdata
Linux Command:  CD /opt/data/edu.harvard.i2b2.data/Release_1-7/NewInstall/Crcdata

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