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The i2b2 on OMOP Installation Guide is designed to assist users with installing and setting up an existing i2b2 environment to work with the OMOP CDM data.

 

Introduction Contents

 


 

About this Guide 

The i2b2 on OMOP project enables the classic i2b2 Software to run against a database that uses the OMOP CDM (multiple fact tables). This guide along with the provided source code will help configure your system for OMOP CDM processing.

 

Assumptions 

This installation guide assumes the following: 

  • You have a working version of i2b2 that is running release 1.7.09 or higher.
  • The i2b2 Admin module has been installed.
  • Your CDM tables have been loaded with the CMS SynPUF 1k data set provided by OMOP
  • The OMOP CDM tables are setup on the same server as the i2b2 data tables.

important Important
If you are new to i2b2 or not familiar with how to install and setup the i2b2, we highly recommend you look at the i2b2 Installation Guide and go through the steps to setup the i2b2 demo environment.

Installation Process 

It is important you follow this guide in the order the steps are written. Some steps need to occur before others in order to prevent issues down the road.

Order of Installation 

  • Step 1: Software and system requirements
  • Step 2: Data installation
  • Step 3: Configuring and Setting up the Software

 

 

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