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The data in this package provides data for a domain of i2b2demo and a project of Demo. The assumption is that the PM Service will be configured as such when installing the PM Cell.

Order of Installation

It is important the tables, procedures, and views are installed in the order defined below. Failure to do so will result in errors when running the scripts.

CRC Tables

   crcdata: create tables

   crcdata: create stored procedures

   crcdata: load data

   crcdata: create OMOP views

Ontology Tables

   metadata: create tables

   metadata: load data 

Workplace Tables

   workdata: create tables

   workdata: load data 



Extract the i2b2 Data Package

In the Requirements Chapter of this install document you downloaded a zip file that contained the i2b2 on OMOP data package. This zip file contains only those data installation scripts needed to create the i2b2 tables and load sample data for this project.

Steps to extract the code

1. Set up a target source directory for the i2b2 on omop data.
2. Locate the file you downloaded in the Requirements chapter.
3. Extract the data package into the target source directory you just created.


You will want to make note of the location as it will be needed further along in the i2b2 installation. In the installation document whenever you see YOUR_I2B2_DATA_DIR it will need to be replaced with the location of your i2b2 Data files.

For your convenience an installation Worksheet to track the setup locations has been provided in the Appendices Chapter of the i2b2 Installation Guide..

Directory Structure and Schema Mapping


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