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The i2b2 on OMOP Installation Guide is designed to assist users with installing and setting up an existing i2b2 environment to work with the OMOP CDM data.

 

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About this Guide 
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The i2b2 on OMOP project enables the classic i2b2 Software to run against a database that uses the OMOP CDM (multiple fact tables). This guide along with the provided source code will help configure your system for OMOP CDM processing.

 

Assumptions 
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This installation guide assumes the following: 

  • You have a working version of i2b2 that is running release 1.7.09 or higher.
  • The i2b2 Admin module has been installed.
  • Your CDM tables have been loaded with the CMS SynPUF 1k data set provided by OMOP
  • The OMOP CDM tables are setup on the same server as the i2b2 data tables.

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					<b>Important</b>
					<br>If you are new to i2b2 or not familiar with how to install and setup the i2b2, we highly recommend you look at the <a href="https://community.i2b2.org/wiki/display/getstarted/i2b2+Installation+Guide">i2b2 Installation Guide</a> and go through the
steps to setup the i2b2 demo environment.
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Installation Process 
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It is important you follow this guide in the order the steps are written. Some steps need to occur before others in order to prevent issues down the road.

Order of Installation 
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  •  Step 1: Software and system requirements
  •  Step 2: Data installation
  •  Step 3: Configuring and Setting up the Software