IDRT - Integrated Data Repository Toolkit
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Truncate i2b2 Project?

If you check this, the project will be truncated before the data is uploaded.

Truncate Previous Queries?

This will truncate the previous queries tables.

Database Indexing

Ignore: Don't touch the indexes;
Stop/Start: Stop the indexes before the upload and start them afterwards;
Drop/Create: Drop the indexes before the upload and create them from scratch afterwards.

Set patient_count after import

This will fill the c_totalnum column.

CSV Folder

Here you can select the folder that contains all CSV files you want to upload.

Use PID Generator

This will use the PID Generator, which has to be configured seperately separately (see Options).

IDAT Options

Select whether your identifying data is in the same or in an extra file.


Select the identifying data file here.

Date Pattern

Here you can select the date pattern that your data uses (e.g. dd-MM-yyyy).

Quote Character

Here you can set the quote character , that you use in your CSV files.

Save Settings?

This will save the settings for the next import. Note: The truncate checks are never saved.


Name of the Button



If your CSV file does not start directly at the beginning, you can set the starting row here.

Clear Table

This will delete your configuration for the selected file.

Guess Schema

You can let the Import Browser try to guess the schema of the file. You can set in the Options how many rows the Import Browser should look through.
This will override your config!

Guess All Schemata

This will guess the schema for all files in the directory.
This will override all your configs!

If you hit Finish the upload starts. You can observe the progress in the progress bar of the Import Browser.