Events
Space shortcuts
Space Tools

Versions Compared

Old Version 1

changes.mady.by.user Janice Donahoe

Saved on

compared with

New Version 2

changes.mady.by.user Janice Donahoe

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Session Summary

<Add Summary>Obtaining computed phenotypes, Implementation of Natural Language Processing (NLP) and the use of learning algorithms with applications for directing the phenotyping workflow are discussed during this session.

 

 

Section
Column
width15%
Presenters (4)

 

 

html-text
<html>
	<body>
		<h5 class="i2b2-event-presenter">Victor Castro</h5>
			<p class="i2b2-event-presenter-position">Corporate Team Lead II</p>
			<p class="i2b2-event-presenter-company">Partners HealthCare</p>
	</body>
</html>
 

 

Image Removed 

Image Added

 

html-text
<html>
	<body>
		<h5 class="i2b2-event-presenter">Vivian Gainer<>James Cimino, MD</h5>
			<p class="i2b2-event-presenter-position">Corporate Manager<>Director, Informatics Institute</p>
			<p class="i2b2-event-presenter-company">Partners HealthCare<>University of Alabama at Birmingham</p>
	</body>
</html>
 

 

 

Image Removed 

 

Image Added

 

html-text
<html>
	<body>
		<h5 class="i2b2-event-presenter">James Cimino, MD<>Vivian Gainer</h5>
			<p class="i2b2-event-presenter-position">Director, Informatics Institute<>Corporate Manager</p>
			<p class="i2b2-event-presenter-company">University of Alabama at Birmingham<>Partners HealthCare</p>
	</body>
</html>
 

 

 

 

 

 

html-text
<html>
	<body>
		<h5 class="i2b2-event-presenter">Ken Mandl, MD, MPH </h5>
			<p class="i2b2-event-presenter-position">Director, Computational Health Informatics Program</p>
			<p class="i2b2-event-presenter-company">Boston Children's Hospital</p>
			<p></p>
			<p class="i2b2-event-presenter-position">Professor of Biomedical Informatics</p>
			<p class="i2b2-event-presenter-company">Harvard Medical School</p>
	</body>
</html>
 

 

Column

 

Column
Presentations (3)

 

Presentation 1:
Update

Presenters:

 

High-throughput Population Phenotyping

Presenter(s): Victor Castro and Vivian Gainer


    • High-quality computed phenotype
    • Partners Biobank
    • Phenotyping the biobank population
    • High-throughput phenotype training

 

View file
nameAUG2016_MacFaddenCastro.pdf
height150

 

 

 

Presentation 2:
 Feasibility Studies Using SHRINE and i2b2
 i2b2 Development at UAB (UABi2b2)

Presenter: Nich Wattanasin

 

New features added to SHRINE and i2b2 Web Clients to help improve the workflow of identifying and extracting patient sets for clinical studies or trials.

(s): James Cimino, MD

 

    • Automatic IRB approval for limited data sets
    • UAB Learning System
    • i2b2 incremental updates
    • Infobuttons for i2b2 (i3b3 plug-in)

 

View file
nameAUG2016-Wattanasin_Cimino.pdf
height150

 

 

Presentation 3:
Using i2b2 Data to Determine Clinical Trial Feasibility in the TriNetX Network

Presenter: Jack London

    • Overview of cancer clinical trial accrual problem
    • TriNetX Clinical Research Network and Jefferson University's participation

 

View file
nameAUG2016_London.pdf
height150

 

 

Presentation 4: SMART on FHIR on i2b2

Presenter: Kavi Wagholikar

 

    • New FHIR Cell
    • Standardizing docker containers
Data Fusion in Phenotypes EHR, Registry, PRO

Presenter(s): Ken Mandl, MD, MPH

    • More common phenotypes in Non-Registry
    • More common phenotypes in Registry
    • C3-PRO: Connecting ResearchKit to the Health System Using i2b2 and FHIR

 

View file
nameAUG2016

-Wagholikar

_Mandl.pdf
height150