Session Summary

Obtaining computed phenotypes, Implementation of Natural Language Processing (NLP) and the use of learning algorithms with applications for directing the phenotyping workflow are discussed during this session.

 

 

Presenters (4)

 

 

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		<h5 class="i2b2-event-presenter">Victor Castro</h5>
			<p class="i2b2-event-presenter-position">Corporate Team Lead II</p>
			<p class="i2b2-event-presenter-company">Partners HealthCare</p>
	</body>
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	<body>
		<h5 class="i2b2-event-presenter">James Cimino, MD</h5>
			<p class="i2b2-event-presenter-position">Director, Informatics Institute</p>
			<p class="i2b2-event-presenter-company">University of Alabama at Birmingham</p>
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		<h5 class="i2b2-event-presenter">Vivian Gainer</h5>
			<p class="i2b2-event-presenter-position">Corporate Manager</p>
			<p class="i2b2-event-presenter-company">Partners HealthCare</p>
	</body>
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		<h5 class="i2b2-event-presenter">Ken Mandl, MD, MPH </h5>
			<p class="i2b2-event-presenter-position">Director, Computational Health Informatics Program</p>
			<p class="i2b2-event-presenter-company">Boston Children's Hospital</p>
			<p></p>
			<p class="i2b2-event-presenter-position">Professor of Biomedical Informatics</p>
			<p class="i2b2-event-presenter-company">Harvard Medical School</p>
	</body>
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Presentations (3)

 

Presentation 1: High-throughput Population Phenotyping

Presenter(s): Victor Castro and Vivian Gainer


    • High-quality computed phenotype
    • Partners Biobank
    • Phenotyping the biobank population
    • High-throughput phenotype training

 

 

 

 

Presentation 2: i2b2 Development at UAB (UABi2b2)

Presenter(s): James Cimino, MD

 

    • Automatic IRB approval for limited data sets
    • UAB Learning System
    • i2b2 incremental updates
    • Infobuttons for i2b2 (i3b3 plug-in)

 

 

 

Presentation 3: Data Fusion in Phenotypes EHR, Registry, PRO

Presenter(s): Ken Mandl, MD, MPH

    • More common phenotypes in Non-Registry
    • More common phenotypes in Registry
    • C3-PRO: Connecting ResearchKit to the Health System Using i2b2 and FHIR