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  1. i2b2 Core Software
  2. CORE-38

Build Error while installing ontology cell

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.5.00
    • Fix Version/s: 1.6.00
    • Component/s: Install, Ontology Cell
    • Labels:
      None
    • Environment:
      Windows XP Service Pack 3, IIS 6.0, JDK 1.6.0_24, Ant 1.6.5, JBOSS 4.2.2, Axis 2, PHP 5.3.5, SQL Express
    • Rank:
      0|i0012n:

      Description

      Hopefully I'm posting this to the appropriate place. I'm attempting to install the Ontology cell and I'm getting the following build error. I've included the command and the log of the build.

      I'm at a loss as I'm not familiar enough with Ant to trace this to the root issue. I've been able to build and deploy the project management module with out issue.

      I've configured the various properties files as outlined in the ontology installation guide.

      Any assistance is appreciated.

      If anymore information is needed please let me know.

      Thanks.

      C:\Program Files\Java\apache-ant-1.6.5-bin\apache-ant-1.6.5\bin>ant -f "C:\Prog
      am Files\Java\I2B2_Source\edu.harvard.i2b2.ontology\master_build.xml" clean bui
      d-all deploy

      Buildfile: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ontology\master_b
      ild.xml

      common_init:

      common_clean:
           [echo] Cleaning non-source directories in C:\Program Files\Java\I2B2_Sourc
      \edu.harvard.i2b2.ontology
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\classes
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\dist
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\gensrc
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\genlib

      clean:

      common_init:
          [mkdir] Created dir: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ont
      logy\genlib
          [mkdir] Created dir: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ont
      logy\dist
          [mkdir] Created dir: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ont
      logy\gensrc
          [mkdir] Created dir: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ont
      logy\classes

      common_clean:
           [echo] Cleaning non-source directories in C:\Program Files\Java\I2B2_Sourc
      \edu.harvard.i2b2.ontology
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\classes
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\dist
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\gensrc
         [delete] Deleting directory C:\Program Files\Java\I2B2_Source\edu.harvard.i2
      2.ontology\genlib

      build-all:

      common_init:

      init:

      compile:

      dist:
           [echo] i2b2Common: Creating the archive package!
           [copy] Copying 1 file to C:\Program Files\Java\I2B2_Source\edu.harvard.i2b
      .ontology\genlib

      dist:
           [echo] Ontology: Creating the archive package!

      common_init:
          [mkdir] Created dir: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ont
      logy\dist
          [mkdir] Created dir: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ont
      logy\gensrc
          [mkdir] Created dir: C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ont
      logy\classes

      common-classpath:

      init:

      jaxb_gen:
            [xjc] Consider using <depends>/<produces> so that XJC won't do unnecessar
       compilation
            [xjc] Compiling file:/C:/Program Files/Java/I2B2_Source/edu.harvard.i2b2.
      ml/xsd/cell/ont_1.1/ONT_QRY.xsd and others

      BUILD FAILED
      C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ontology\master_build.xml:13
       The following error occurred while executing this line:
      C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ontology\build.xml:80: The f
      llowing error occurred while executing this line:
      C:\Program Files\Java\I2B2_Source\edu.harvard.i2b2.ontology\build.xml:44: java.
      ang.NullPointerException

      Total time: 2 seconds
      C:\Program Files\Java\apache-ant-1.6.5-bin\apache-ant-1.6.5\bin>

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              • Created:
                Updated:
                Resolved:

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