Health Ontology Mapper (HOM)
(The Health Ontology Mapper (OntoMapper) is an open source general purpose instance mapper for academic research, public hospitals and non-profits.)
Principal Investigators: Rob Wynden, Russ Cucina (UCSF) and Nick Anderson (UW)
Project Director: Rob Wynden (firstname.lastname@example.org, 415-476-3728)
Ontology Mapper Original Design: Rob Wynden (UCSF), Davera Gabriel (UCD), Marco Casale (Rochester) and Maggie Massary (UPenn)
Mapping Workbench Design: Rob Wynden (UCSF)
(the original grant application technical proposal can be viewed here: Ontomapper+Grant+v.7+4.14.08+FINAL.pdf)
License: Open Source BSD License http://www.linfo.org/bsdlicense.html ... (For an optional commercial license contact: Ellen Kats at UCSF Tech Transfer.) If you would like to purchase a Support License for Ontology Mapper please contact Peter Emerson at Recombinant Data Corp at email@example.com.
To reference this project please use: Wynden R, Weiner MG, Sim I, Gabriel D, Casale M, Carini S, Hastings S, Ervin D, Tu S, Gennari J, Anderson N, Mobed K, Lakshminarayanan P, Massary M, Cucina R. Ontology mapping and data discovery for the translational investigator. Presented at the 2010 AMIA Summit on Clinical Research Informatics meeting, March 12-13 2010, San Francisco, CA. You can read it HERE
HOM call weekly status: 11AM Pacific every Tuesday at: 800 794 6702 Passcode: 5071491#
ConferencePlus http://web.meetme.net/r.aspx?p=2&a=70541783633875 (passcode 5071491#)
(please note that the UETL subteam has joined this same con-call as well...)
Publications Page (our primary publication so far is shown in green above)
Schedule (we just track dependencies on the gantt here... just ignore the dates)
Our installation documentation is located here: HealthOntologyMapperInstall.doc
Bug tracking is listed as a subproject of HOM here: https://community.i2b2.org/jira/secure/Dashboard.jspa
The UETL Sub-project is located at: http://wiki.recomdata.com/display/CTSAuniETL/The+Universal+ETL+Project
Ontology Mapper's data dictionary and HL7 CTS XML spec are published on CTSpedia.org(for access please contact Hillari Allen at Hillari.Allen@ucsf.edu)
Revision Control is available on Subversion. Please contact Aaron Mandel firstname.lastname@example.org for access to Subversion.
Subversion can be viewed from any web browser at: http://svn.recomdata.com/viewvc
Subversion clients can be obtained here: http://subversion.tigris.org
Coding guidelines are posted here: http://wiki.recomdata.com/display/rdci2b2/i2b2+source+code+repository-bridge
The PUBLIC website for the CTSA Ontology Mapper SHRINE integration is located here: http://www.i2b2cictr.orghowever the caGRID based site has not been made public yet (not because it's secret or anything but we haven't had the time yet) by OSU.
The Ontology Mapper project has been very active from its inception. We are now entering our Beta Release and our focus is now on creating an official build system and support pipeline.
This project is currently making our tools interoperable with both SHRINE and the NCBO BioPortal with the OpenMDR TRIAD system at OSU. The OpenMDR Wiki is available at: http://cagrid.org/display/MDR/Home