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Version Information

Current Version:1.7.09c
Release Date:December 6, 2017
License:i2b2 Open Source License

Download

Descriptioni2b2 Released VersionMinimum Version RequiredDownload LinkRequirements
Files to upgrade the i2b2 server to 1.7.09c.1.7.09c1.7.05 i2b2upgrade-1705-to-1709c.zipSee Technical Details section on the i2b2 Upgrades page.

Upgrade Instructions

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Knowing some sites have remained on JBoss 7 and some have upgraded to WildFly 10, we have gone ahead and provided Step-by-Step Instructions for both scenarios. For the most part the overall process is very similar. What is different, is the path in which the files reside. See examples shown below.

JBoss 7 path to i2b2.war

 

/opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/

 

WildFly 10 path to i2b2.war

/opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/

Step-by-Step Instructions for JBoss

Stop JBoss

Linux Example 
$ /opt/jboss-as-7.1.1.Final/bin/jboss-cli.sh --connect command=:shutdown

Backup your existing i2b2.war directory

Linux

On Linux, make a copy of /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/jboss-as-7.1.1.Final/ 

Windows

On Windows, make a copy of c:\opt\jboss-as-7.1.1.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\jboss-as-7.1.1.Final\ 

Delete i2b2.war.deployed file

Linux Example 
$ rm /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war.deployed

Extract the files from the upgrade zip file to a local directory

Contents of Zip File

i2b2 Upgrade Instructions for 1.7.05+ to 1.7.09c.pdf

configuration/
configuration/crcapp/
configuration/crcapp/crc.properties-1709

deployments/
deployments/i2b2.war.dodeploy
deployments/i2b2.war/
deployments/i2b2.war/WEB-INF/
deployments/i2b2.war/WEB-INF/lib/
deployments/i2b2.war/WEB-INF/lib/CRC-core.jar
deployments/i2b2.war/WEB-INF/lib/FR-core.jar
deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar
deployments/i2b2.war/WEB-INF/lib/IM-core.jar
deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar
deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar
deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar
deployments/i2b2.war/WEB-INF/services/
deployments/i2b2.war/WEB-INF/services/CRC.aar
deployments/i2b2.war/WEB-INF/services/FR.aar
deployments/i2b2.war/WEB-INF/services/IM.aar
deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
deployments/i2b2.war/WEB-INF/services/Ontology.aar
deployments/i2b2.war/WEB-INF/services/Workplace.aar

Copy the deployments directory you extracted from the zip file to your JBoss standalone directory, replacing any existing files when prompted.

Linux Example 
$ cp -r deployments /opt/jboss-as-7.1.1.Final/standalone

Modify the crc.properties

 

Start JBoss

Linux Example 
$ /opt/jboss-as-7.1.1.Final/bin/standalone.sh -b 0.0.0.0 &

Verify your upgrade

Test Web Client

Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)

 

 


 

Step-by-Step Instructions for WildFly

  1. Stop WidlFly

    Linux Example 
    $ /opt/wildfly-10.0.0.Final/bin/jboss-cli.sh --connect command=:shutdown

  2. Backup your existing i2b2.war directory

    On Linux, make a copy of /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/jboss-as-7.1.1.Final/
    On Windows, make a copy of c:\opt\wildfly-10.0.0.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\jboss-as-7.1.1.Final\ 

  3. Delete i2b2.war.deployed file

    Linux Example 
    $ rm /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war.deployed

  4. Extract / copy the files from the upgrade zip file to your WildFly deployments directory

    The upgrade zip file contains the following files: i2b2 Upgrade Instructions for 1.7.05+ to 1.7.09c.pdf deployments/ deployments/i2b2.war.dodeploy deployments/i2b2.war/ deployments/i2b2.war/WEB-INF/
    deployments/i2b2.war/WEB-INF/lib/
    deployments/i2b2.war/WEB-INF/lib/CRC-core.jar
    deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar
    deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar
    deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar
    deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar
    deployments/i2b2.war/WEB-INF/lib/FR-core.jar
    deployments/i2b2.war/WEB-INF/lib/IM-core.jar
    deployments/i2b2.war/WEB-INF/services/
    deployments/i2b2.war/WEB-INF/services/CRC.aar
    deployments/i2b2.war/WEB-INF/services/IM.aar
    deployments/i2b2.war/WEB-INF/services/FR.aar
    deployments/i2b2.war/WEB-INF/services/Ontology.aar
    deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
    deployments/i2b2.war/WEB-INF/services/Workplace.aar

  5. Start WildFly

    Linux Example 
    $ /opt/wildfly-10.0.0.Final/bin/standalone.sh -b 0.0.0.0 &
  6. Verify your upgrade

Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)

 

 

Notes

  • Release 1.7.09c does contain changes to the i2b2 Web Client. Therefore you will need to download the i2b2webclient-1709c.zip file from the i2b2.org/software website. You will also need to update the i2b2 Admin on the i2b2 Server.
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