Skip to end of metadata
Go to start of metadata
You are viewing an old version of this page. View the current version.
Compare with Current
View Page History
« Previous
Version 13
Next »
Download
Description | i2b2 Released Version | Minimum Version Required | Download Link | Requirements |
---|
Files to upgrade the i2b2 server to 1.7.09c. | 1.7.09c | 1.7.05 | i2b2upgrade-1705-to-1709c.zip | See Technical Details section on the i2b2 Upgrades page. |
Upgrade Notes
- Release 1.7.09 had changes to the crc.properties file. Since some sites might be upgrading from 1.7.08 or earlier, we have kept the steps to update the crc.properties files in these updgrade notes. However, if you are already on 1.7.09, 1.7.09a or higher you will skip the step to modify the crc.properties file as you have already done this step.
- Release 1.7.09c contains changes to the i2b2 Web Client. Therefore in addition to the upgrade zip file you also need to download the i2b2webclient-1709c.zip file from the i2b2.org/software website.
- Because this release contains Web Client changes, the i2b2 Admin module that resides on the i2b2 server will also need to be updated. The Web Client and Admin share code and although none of the changes are specific to the Admin, this update in necessary to make sure the two applications remain in sync.
Upgrade Instructions
Error rendering macro 'excerpt-include'
No link could be created for 'i2b2 Upgrades'.
Knowing some sites have remained on JBoss 7 while some have upgraded to WildFly 10, we have gone ahead and provided Step-by-Step Instructions for both scenarios. For the most part the overall process is very similar. What is different, is the path in which the files reside. Expand the box below to see an example of the differences between the two path names.
Example Paths to i2b2.war
/opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/
/opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/
Step-by-Step Instructions for JBoss
Stop JBoss
$ /opt/jboss-as-7.1.1.Final/bin/jboss-cli.sh --connect command=:shutdown
Backup your existing i2b2.war directory
Linux
On Linux, make a copy of /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/jboss-as-7.1.1.Final/
Windows
On Windows, make a copy of c:\opt\jboss-as-7.1.1.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\jboss-as-7.1.1.Final\
Delete i2b2.war.deployed file
$ rm /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war.deployed
Extract / copy the files from the upgrade zip file to your JBoss deployments directory
Contents of Zip File
i2b2 Upgrade Instructions for 1.7.05+ to 1.7.09c.pdf
configuration/
configuration/crcapp/
configuration/crcapp/crc.properties-1709
deployments/
deployments/i2b2.war.dodeploy
deployments/i2b2.war/
deployments/i2b2.war/WEB-INF/
deployments/i2b2.war/WEB-INF/lib/
deployments/i2b2.war/WEB-INF/lib/CRC-core.jar
deployments/i2b2.war/WEB-INF/lib/FR-core.jar
deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar
deployments/i2b2.war/WEB-INF/lib/IM-core.jar
deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar
deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar
deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar
deployments/i2b2.war/WEB-INF/services/
deployments/i2b2.war/WEB-INF/services/CRC.aar
deployments/i2b2.war/WEB-INF/services/FR.aar
deployments/i2b2.war/WEB-INF/services/IM.aar
deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
deployments/i2b2.war/WEB-INF/services/Ontology.aar
deployments/i2b2.war/WEB-INF/services/Workplace.aar
admin/
Copy the deployments directory into your existing JBoss standalone directory, replacing any existing files when prompted.
$ cp -r deployments /opt/jboss-as-7.1.1.Final/standalone
Modify the crc.properties
Update crc.properties
Open the crc.properties-1709 file and copy the contents from it into the crc.properties file located in the configuration directory on the i2b2 server.
Backup your existing admin directory
Extract / Copy the admin directory from the update zip file to your web server directory
Copy your old i2b2_config_data.js file into the updated admin directory on your web server. Overwrite the existing file if prompted.
Start JBoss
$ /opt/jboss-as-7.1.1.Final/bin/standalone.sh -b 0.0.0.0 &
Verify your upgrade
Test Web Client
Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)
Step-by-Step Instructions for WildFly
Stop WildFly
$ /opt/wildfly-10.0.0.Final/bin/jboss-cli.sh --connect command=:shutdown
Backup your existing i2b2.war directory
Linux
On Linux, make a copy of /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/wildfly-10.0.0.Final/
Windows
On Windows, make a copy of c:\opt\wildfly-10.0.0.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\wildfly-10.0.0.Final\
Delete i2b2.war.deployed file
$ rm /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war.deployed
Extract / copy the files from the upgrade zip file to your JBoss deployments directory
Contents of Zip File
i2b2 Upgrade Instructions for 1.7.05+ to 1.7.09c.pdf
configuration/
configuration/crcapp/
configuration/crcapp/crc.properties-1709
deployments/
deployments/i2b2.war.dodeploy
deployments/i2b2.war/
deployments/i2b2.war/WEB-INF/
deployments/i2b2.war/WEB-INF/lib/
deployments/i2b2.war/WEB-INF/lib/CRC-core.jar
deployments/i2b2.war/WEB-INF/lib/FR-core.jar
deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar
deployments/i2b2.war/WEB-INF/lib/IM-core.jar
deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar
deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar
deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar
deployments/i2b2.war/WEB-INF/services/
deployments/i2b2.war/WEB-INF/services/CRC.aar
deployments/i2b2.war/WEB-INF/services/FR.aar
deployments/i2b2.war/WEB-INF/services/IM.aar
deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
deployments/i2b2.war/WEB-INF/services/Ontology.aar
deployments/i2b2.war/WEB-INF/services/Workplace.aar
admin/
Copy the deployments directory into your existing JBoss standalone directory, replacing any existing files when prompted.
$ cp -r deployments /opt/jboss-as-7.1.1.Final/standalone
Modify the crc.properties
Update crc.properties
Open the crc.properties-1709 file and copy the contents from it into the crc.properties file located in the configuration directory on the i2b2 server.
Backup your existing admin directory
Extract / Copy the admin directory from the update zip file to your web server directory
Copy your old i2b2_config_data.js file into the updated admin directory on your web server. Overwrite the existing file if prompted.
Start JBoss
$ /opt/wildfly-10.0.0.Final/bin/standalone.sh -b 0.0.0.0 &
Verify your upgrade
Test Web Client
Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)