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- Download latest stored procedures from github
- Execute the stored procedures on your database to create the patientnum and encounternumbers
- Download SyntheticMass Data, Version 2 (24 May, 2017)
- Set up an i2b2 project with the ACT ontology.
- Run
create_synthea_table_sqlserver.sql
in your project to create the Synthea tables. - Import the Synthea data you downloaded in step one into the Synthea tables in your project.
- Load the i2b2-to-SNOMED table in this repository into your project. https://www.nlm.nih.gov/healthit/snomedct/us_edition.html
- Run
synthea_to_i2b2_sqlserver.sql
to convert synthea data into i2b2 tables (this will truncate your existing fact and dimension tables!)- Replace references to
i2b2metadata.dbo
in the script. Use the database and schema where your ACT ontology tables are.
- Replace references to
ACT Version-4 Ontology data load
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