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Section

Update Database Lookup tables

The DB_LOOKUP tables all the cells to find the right database schema for a particular project. As of i2b2 release 1.7.07 the DB_LOOKUP tables can be added, edited and removed from within the i2b2 Admin Module. The following steps will walk you through adding a new CRC_DB_LOOKUP and ONT_DB_LOOKUP for your OMOP database schema and OMOP project.

CRC_DB_LOOKUP

1. Log into your i2b2 Admin Module

2. In the PM Navigation tree on the left, expand Manage Cells to display a list of your i2b2 cells currently configured.

3. Expand the entry for your Data Repository and you will see an item listed called DB-Lookup.

4. Select DB-Lookup in the Navigation panel to display the DB-Lookup List page.

5. On the right side of the page, click on Add New DB-Lookup.

6. The DB-Lookup enter / edit page will display.

Image Added

7. Add the following information:

Name:A name for this entry
Project Path:/OMOP/
DB Schema:full schema of your CDM database
JNDI Data Source:java:/OMOP_CDM_{ORACLE | POSTGRESQL | SQLSERVER}
Tooltip: 
Comment: 
DB Server:Select the appropriate type of database for your environment

 

8. Click on Save to file the changes to the CRC_DB_LOOKUP table.

ONT_DB_LOOKUP

The steps to update the ONT_DB_LOOKUP table are, for the most part the same as the CRC_DB_LOOKUP table. The only notable exceptions are:

(1) Expand the Ontology Cell instead of the Data Repository Cell

(2) The Project Path does not contain a leading forward slash

Name:A name for this entry
Project Path:OMOP/
DB Schema:full schema of your CDM database
JNDI Data Source:java:/OMOP_CDM_{ORACLE | POSTGRESQL | SQLSERVER}
Tooltip: 
Comment: 
DB Server:Select the appropriate type of database for your environment