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Installation Guide for i2b2 on

OMOP

OMOP Project Summary 

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The legacy i2b2 data model is comprised of a central fact table (observation_fact) surrounded by multiple dimension tables arranged in a star schema.  In the Observational Medical Outcomes Partnership Common Data Model (OMOP CDM), rather than a central fact table, we have a collection of them distinguished by domain:  procedures, condition, drug, measurement, observation, etc.  In this project, we modify the CRC to run queries against multiple domain fact tables as dictated by the metadata. 

The i2b2 1.7.09-RC1 software and data packages are designed to run with OMOP version 5.  The sample metadata provided is intended to run queries against the CMS SynPUF 1K data set provided by OMOP.  It is recommended that users of this software are familiar with OMOP and it is required that the synPUF data is installed. 

guide

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            <a class="confluence-thumbnail-link 625x390" href="https://community.i2b2.org/wiki/download/attachments/14091794/i2b2OMOP_installGuide.pdf">
                <img src="https://community.i2b2.org/wiki/download/attachments/14091764/Adobe_PDF_file_icon_32x32.png" alt="pdf icon" width="42" height="42" style="float:right" vertical-align="middle">
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