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<!DOCTYPE html> <html> <head> <title>Upgrade i2b2 Software</title> <meta charset="UTF-8"> <meta name="description" content="Upgrading the i2b2 Software to the latest version" /> <meta name="keywords" content="i2b2, release, upgrade, 1.7.12" /> <!-- <link rel="stylesheet" type="text/css" media="all" href="/stylesheets/i2b2-wiki.css" /> --> </head> <body> <h1 class="releaseHeading" id="upgradeVersion-current">Upgrade to Release 1.7.12 from 1.7.09c</h1> </body> </html> |
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Version Information
Current Version: | 1.7.12 |
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Release Date: | October 31, 2019 |
License: | Mozilla 2 Open Source License |
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Download
Description | i2b2 Released Version | Minimum Version Required | Download Link | Requirements | ||||||
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Files to upgrade the i2b2 server to 1.7.12 | 1.7.12 | 1.7.09c | i2b2_upgrade_1.7.09c_to_1.7.12.2b2core-war-1712.zip | See Technical Details section on the i2b2 Upgrades page. | Files to upgrade the i2b2 Database to 1.7.12 | 1.7.12 | Files to upgrade the i2b2 Web Client to 1.7.12 | 1.7.12 | ||
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Notes
- Release 1.7.12 contains changes to the i2b2 database and Web Client. Therefore in addition to the i2b2upgrade-1712.zip file you also need to download the i2b2createdb-1712.zip and i2b2webclient-1712.zip files. The process of installing the i2b2 Web Client has not changed. If you have questions on how this is done you can find additional information in Chapter 7. i2b2 Web Client Install of the i2b2 Installation Guide.
- If you are upgrading to 1.7.12 from a release prior to 1.7.09c it is important you read the upgrade documentation before upgrading your system because earlier upgrades had changes to properties files. When a release has a change to a property file as did 1.7.09 we will make note of it and outline the steps to merge the changes into your local properties file.
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Upgrade Instructions
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Knowing some sites have remained on JBoss 7 while some have upgraded to WildFly 10, we have gone ahead and provided Step-by-Step Instructions for both scenarios. For the most part the overall process is very similar. What is different, is the path in which the files reside. Expand the box below to see an example of the differences between the two path names.
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Delete i2b2.war.deployed file
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$ rm /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war.deployed |
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DO NOT delete your existing i2b2.war directory. The zip file contains only a subset of files to add/replace in your existing i2b2.war directory. |
Extract / copy the deployment files from the upgrade zip file to your JBoss deployments directory
Copy the deployments directory into your existing JBoss standalone directory, replacing any existing files when prompted.
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$ cp -r deployments /opt/jboss-as-7.1.1.Final/standalone |
Start JBoss
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$ /opt/jboss-as-7.1.1.Final/bin/standalone.sh -b 0.0.0.0 & |
Verify your upgrade
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Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.) |
Step-by-Step Instructions for WildFly
Step-by-Step Instructions for
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Stop JBoss
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$ /opt/jboss-as-7.1.1.Final/bin/jboss-cli.sh --connect command=:shutdown |
Backup your existing i2b2.war directory
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On Linux, make a copy of /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/jboss-as-7.1.1.Final/ |
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On Windows, make a copy of c:\opt\jboss-as-7.1.1.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\jboss-as-7.1.1.Final\ |
WildFly
In the following instructions the variable { version } refers to your version of Wildfly installed. We have tested with Wildfly 10, 14, and 17.
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Contents of the Zip File
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database/ Crcdata/ scripts/ oracle/ query_demo_insert_data.sql postgresql/ query_demo_insert_data.sql sqlserver/ query_demo_insert_data.sql crc_create_query_oracle.sql crc_create_query_postgresql.sql crc_create_qyert_sqlserver.sql Metadata/ ont_oracle.sql ony_postgresql.sql ont_sqlserver.sql Pmdata/ upgrade_oracle_i2b2pm_tables.sql upgrade_postgresql_i2b2pm_tables.sql upgrade_sqlserver_i2b2pm_tables.sql deployments/ deployments/i2b2.war/ deployments/i2b2.war/WEB-INF/ deployments/i2b2.war/WEB-INF/lib/ deployments/i2b2.war/WEB-INF/lib/CRC-core.jar deployments/i2b2.war/WEB-INF/lib/FR-core.jar deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar deployments/i2b2.war/WEB-INF/lib/IM-core.jar deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar deployments/i2b2.war/WEB-INF/services/ deployments/i2b2.war/WEB-INF/services/CRC.aar deployments/i2b2.war/WEB-INF/services/FR.aar deployments/i2b2.war/WEB-INF/services/IM.aar deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar deployments/i2b2.war/WEB-INF/services/Ontology.aar deployments/i2b2.war/WEB-INF/services/Workplace.aar deployments/i2b2.war.dodeploy |