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Downloads:
Relevant Documentation:
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- User logs into i2b2 webclient and creates Data table definition using the Create Data Table tool, using desired Ontology elements
- User runs a regular i2b2 query, checking the User-created Data request option(s) when running the query.
- The manager logs in and views the data requests using the Data Request Manager Console.
- Manager user generates the data export files using the Data Request Manager Console.
- The generated data file is stored in a configurable location on the i2b2 server.
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ENACT - V4.2 Ontology
The V4.2 Ontology includes 19 ontologies- 12 updated and 7 unchanged
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Metadata and CRC zip files are provided to in the NewInstall load the latest ENACT Version-4.2 ontology into your db schema using ANT scripts.
The CPT4 ontology table is not included with i2b2 due to AMA restrictions on redistribution of CPT code information. Contact the ENACT team to get a copy if your institution is an AMA member.
ACT ENACT V4.2 data load process
- Download and extract the newinstall zip package from "Download Binary Distribution" in the top section of https://www.i2b2.org/software
- Edit the edu.harvard.i2b2.data\Release_1-8\NewInstall\Metadata\db.properties file to update the project properties to 'ACT' ; db.project=ACT
- From the edu.harvard.i2b2.data\Release_1-8\NewInstall\Metadata folder, run the ant command: ant -f data_build.xml db_metadata_load_data. This will execute the SQL scripts from the edu.harvard.i2b2.data\Release_1-8NewInstall\Metadata\act\scripts\<db type> folder to create and load the metadata tables
- From the edu.harvard.i2b2.data\Release_1-8\NewInstall\crcdata folder, run the ant command: ant -f data_build.xml db_demodata_load_data. This will execute the SQL scripts from the edu.harvard.i2b2.data\Release_1-8NewInstall\crcdata\act\scripts\<db type> folder to create and load the concept_dimension
- Run the scripts from the edu.harvard.i2b2.data\Release_1-8\NewInstall\Metadata \<dbtype>\scripts folder to load the Schemes, Table_access tables
- You can now verify the new Ontology by logging into the webclient
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Note: the ENACT v4.2 ontology is distributed as a New Install only. If you are upgrading, install the v4.2 tables in a different schema from v4.1. Installing in the same schema will insert duplicate rows into the ontology tables that are unchanged from v4.1. Ontology, Concept_dimension and Table_access tables |
ACT Fast Totalnum Scripts
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| Web client |
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WEBCLIENT-368 1.8.2 Webclient update CORE-370 VERACODE Scan - 1.8.2 Webclient |
| Core-server |
CORE-456 Data Export: agg table CORE-455 455 Data Export: Request Management admin tool CORE-451 Enhanced Data Export - download file generation CORE-459 updrade upgrade to wildfly 34 with axis2 version2 CORE-460 Upgrade to JAVA 17 CORE-454 Upgrade Spring jar to version 6 CORE-447 Update JDBC Update JDBC drivers CORE-458 Software maintainence maintenance - drivers, libraries CORE-445 java code java code folder structure for 1.7 should be changed to refer to 1.8.2 |
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