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LOTS OF TABS!
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When upgrading to the v1.7.13 webclient, you will notice that i2b2_config_data.js has been renamed to i2b2_config_data.json. Your old configuration will still work with this new file name, but you will need to remove all comments from the file (lines that begin with //). There are also new optional parameters, documented below and in 1.4.2 Domain Configuration. |
User Registration Tool
TODO
registrationMethod | Y | String | NEW 1.7.13! Defines an information source for the new user registration tool. (If showRegistration is true, this parameter must be present.)
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Community-Contributed Features
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i2b2 now includes support for SAML-based enterprise authentication via an institutional Identity Provider. To configure this, you need to do the following:
Configure the webclient to use SAML:
loginType = "federated" see 1.4.2 Domain Configuration
configure SimpleSAMLPHP (now included with i2b2) to talk to your institution's Identity Provider. To set up SAML:
We will use SimpleSAMLphp for IdP. Place the following files to the folder /etc/shibboleth/:
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A new option is now available for loading Synthea data files into i2b2. Synthetic patient data generated by Synthea is hosted on SyntheticMass..The Synthea sample files have been converted to i2b2-ACT format. The zipped data files can be downloaded from https://github.com/i2b2/i2b2-synthea
Synthea Load Process:
- All data sets (1k, COVID 10k, COVID 100k) have been verified to work EXCEPT the 100k patients in the large SyntheticMass Version 2 download. This version needs an extra step to delete invalid records before import. (Details coming soon.)
- Set up an i2b2 project with the ACT ontology.
- Run
create_synthea_table_<your dbServertype>.sql
in your project to create the Synthea tables. - Import the Synthea data you downloaded in step one into the Synthea tables in your project.
- Load the i2b2-to-SNOMED table in this repository into your project. https://www.nlm.nih.gov/healthit/snomedct/us_edition.html
- Click on the "Download SNOMED-CT to ICD-10-CM Mapping Resources" link to download. (You will need a UMLS account.)
- Unzip the file
- Import the TSV file into a table called SNOMED_to_ICD10 in your database.
- Run
synthea_to_i2b2_sqlserver.sql
to convert synthea data into i2b2 tables (this will truncate your existing fact and dimension tables!)- Replace references to
i2b2metadata.dbo
in the script. Use the database and schema where your ACT ontology tables are.
- Replace references to
ACT Version-4 Ontology data load
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