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Relevant Documentation:

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Description

Export Extension: Create data table

The Create Data Table tool allows the i2b2 user to create their own data table definitions with ontology variables and then request data exports in the Run Query dialog.

Export Extension: Data Request Manager

The Data Request Manager tool allows an i2b2 manager to manage and process the user data requests.  

NOTE: In this beta release, clicking Create File on a custom-table data request in a Postgres database does not actually generate the file.

Enhanced Data Export Extension

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Both custom table exports and exports of pre-defined tables defined by domain can be run and managed using the new tools.

Manager users can manage and generate these data file exports using the Data Request Manager Console

 



ENACT Ontology v4.2

Upgraded to UMLS 2025AA:

  • Lab (Provisional)
  • Medications grouped alphabetically
  • Medications grouped by VA Classification
  • Diagnosis ICD10CM
  • Procedures CPT4
  • Procedures HCPCS
  • Procedures ICD10PCS

Other updates:

  • Lab (Common)
  • Demographics
  • Social Determinants of Health
  • Research Ontology
  • Vaccines

 Update to new secure versions of software

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The new server uses Java 17, Wildfly 37.01, and Axis2 v2

Digital Twin Bundle (distributed separately) 

Tools for computing loyalty cohorts and computational phenotypes in i2b2. 

Bug fixes


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  1. Download and extract the newinstall zip package from "Download Binary Distribution" in the top section of https://www.i2b2.org/software
  2. Edit the  edu.harvard.i2b2.data\Release_1-8\NewInstall\Metadata\db.properties file to update the project properties to 'ACT' ; db.project=ACT
  3. From the edu.harvard.i2b2.data\Release_1-8\NewInstall\Metadata folder, run the ant command: ant -f data_build.xml db_metadata_load_data. This will execute the SQL scripts from the edu.harvard.i2b2.data\Release_1-8NewInstall\Metadata\act\scripts\<db type> folder to create and load the metadata tables 
  4. From the edu.harvard.i2b2.data\Release_1-8\NewInstall\crcdata folder, run the ant command: ant -f data_build.xml db_demodata_load_data. This will execute the SQL scripts from the edu.harvard.i2b2.data\Release_1-8NewInstall\crcdata\act\scripts\<db type> folder to create and load the concept_dimension 
  5.  Run the scripts from the edu.harvard.i2b2.data\Release_1-8\NewInstall\Metadata \<dbtype>\scripts folder to load the Schemes, Table_access tables
  6. You can now verify the new Ontology by logging into the webclient
Info

Note: the ENACT v4.2 ontology is distributed as a New Install only. If you are upgrading the ENACT ontology, do not install the v4.2 tables in the same a different schema as from v4.1. It Installing in the same schema will insert duplicate rows into the ontology tables that are unchanged from v4.1. 

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Release Management RM