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AMIA_Spring_2011_1.pdf
Ability to query for the variant in the workbench Implication is that the identifier (basecode) for the variant does not change over time or is maintainable … for geneticists vs physicians vs research scientists i2b2 Genomic vocabulary Gather SNP data from genomic lab reporting system Use vocabulary to query against2017-AMIA_UAB_i2b2_educational.ppsx
requirements Overview of the i2b2 application Navigation and use of ontologies, vocabularies and terminologies Basic Query functionality building and viewing results Advanced Query functionality Previous Queries and configuration options Limited Dataset download functions Consultation request functions Resource LinksSCILHSi2b2CDMDocumentation_v152.pdf
querying is supported using SHRINE. We have also developed a transform to create a datamart in the CDM structural format using data mapped to the ontology, which is used for panPCORnet queries. Requirements ● Adapting this ontology to local data is done through a “local mapping” process, which does not requireTranslational Bioinformatics Warehouse Database Design.doc
into the data staging area where it is processed. It should be noted that the staging area is not intended for direct query access. The purpose of data processing … schema. “A star schema is a simple database design (particularly suited to ad-hoc queries) in which dimensional data (describing how data are commonlyHOM Test Plan Requirements Specifications.doc
. I2b2/HOM serves as the initial point for which a researcher can view what data is available to him/her. Through a series of queries and data information elements … interfaces (UIs) for Time Domain Query, Genetic Epidemiology, etc. (depending on the researcher’s Domain) to refine these speculative hypotheses is extremely usefulAUG2016_Murphy.pdf
Traits Caused by a Gene Variant To Help Interpret Features in Medical Images and Tissues Using Big Data to Improve Healthcare 2 The Researcher Querying the System interacts with a Simple Query Tool 3 Clinical Clinical Data Warehouse Text & Notes Repository inde x Biobank Data inde x inde x Genomic Data GenomeAUG2016_Murphy.pdf
Traits Caused by a Gene Variant To Help Interpret Features in Medical Images and Tissues Using Big Data to Improve Healthcare 2 The Researcher Querying the System interacts with a Simple Query Tool 3 Clinical Clinical Data Warehouse Text & Notes Repository inde x Biobank Data inde x inde x Genomic Data GenomeTranslational_Bioinformatics_Warehouse_Database_Design_v4.doc
. It should be noted that the staging area is not intended for direct query access. The purpose of data processing is to normalize the data, using standard data … design (particularly suited to ad-hoc queries) in which dimensional data (describing how data are commonly aggregated) are separated from fact or event dataFinal Gartner 071309 (2).ppt
of information by placing checkmarks next to them. * * Query Dashboard The HOM system allows investigators to view previous requests for information from the data warehouse or grid. Previous queries for information can be reloaded and used as the basis for future queries. * * Instance Mapping The Mapping Tab allowsI2b2 grid integration.ppt
i2b2 server. SHRINE queries are generated using i2b2 Workbench and since SHRINE emulates the SOAP(REST) interface to i2b2 the Workbench code is not even aware … (and SHRINE) will work with Ontology Mapper without modification. SHRINE Layered Integration The i2b2 Workbench (and SHRINE) query and display data from the Obs