Details
-
Bug
-
Status: To Do
-
Major
-
Resolution: Unresolved
-
None
-
None
-
None
-
i2b2 Server VM 1.7.04
i2b2 Workbench
Version: 1.7.04.0004
Build id: 20141020
Description
Trying to synchronize ontologies in the "Edit Terms" view of the workbench leads to "Synchronize process is reporting an error.
Details are attached in the file i2b2-err.pdf
Server log shows following errors:
11:02:52,235 ERROR [stderr] (Thread-114) org.springframework.dao.InvalidDataAccessApiUsageException: 0 parameters were supplied, but 8 in parameters were declared in class [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus]
11:02:52,243 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameterCount(RdbmsOperation.java:436)
11:02:52,247 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameters(RdbmsOperation.java:394)
11:02:52,248 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.SqlUpdate.update(SqlUpdate.java:167)
11:02:52,252 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus.save(Unknown Source)
11:02:52,253 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao.createOntologyProcessStatus(Unknown Source)
11:02:52,262 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.delegate.CRCConceptUpdateHandler.execute(Unknown Source)
11:02:52,263 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.ws.ExecutorRunnable.run(Unknown Source)
11:02:52,266 ERROR [stderr] (Thread-114) at java.lang.Thread.run(Thread.java:745)
11:02:52,267 ERROR [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao] (Thread-114) Dao ontProcessStatus failed
11:02:52,268 ERROR [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao] (Thread-114) 0 parameters were supplied, but 8 in parameters were declared in class [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus]
11:02:52,277 ERROR [stderr] (Thread-114) edu.harvard.i2b2.common.exception.I2B2DAOException: Data access error
11:02:52,278 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao.createOntologyProcessStatus(Unknown Source)
11:02:52,292 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.delegate.CRCConceptUpdateHandler.execute(Unknown Source)
11:02:52,297 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.ws.ExecutorRunnable.run(Unknown Source)
11:02:52,298 ERROR [stderr] (Thread-114) at java.lang.Thread.run(Thread.java:745)
11:02:52,298 ERROR [stderr] (Thread-114) Caused by: org.springframework.dao.InvalidDataAccessApiUsageException: 0 parameters were supplied, but 8 in parameters were declared in class [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus]
11:02:52,301 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameterCount(RdbmsOperation.java:436)
11:02:52,306 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameters(RdbmsOperation.java:394)
11:02:52,309 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.SqlUpdate.update(SqlUpdate.java:167)
11:02:52,310 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus.save(Unknown Source)
11:02:52,315 ERROR [stderr] (Thread-114) ... 4 more
11:03:47,025 ERROR [edu.harvard.i2b2.ontology.ws.OntologyService] (http--0.0.0.0-9090-2) er.jobException is Data access error
11:03:47,026 INFO [edu.harvard.i2b2.ontology.ws.OntologyService] (http--0.0.0.0-9090-2) waitTime is 120000
Details are attached in the file i2b2-err.pdf
Server log shows following errors:
11:02:52,235 ERROR [stderr] (Thread-114) org.springframework.dao.InvalidDataAccessApiUsageException: 0 parameters were supplied, but 8 in parameters were declared in class [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus]
11:02:52,243 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameterCount(RdbmsOperation.java:436)
11:02:52,247 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameters(RdbmsOperation.java:394)
11:02:52,248 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.SqlUpdate.update(SqlUpdate.java:167)
11:02:52,252 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus.save(Unknown Source)
11:02:52,253 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao.createOntologyProcessStatus(Unknown Source)
11:02:52,262 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.delegate.CRCConceptUpdateHandler.execute(Unknown Source)
11:02:52,263 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.ws.ExecutorRunnable.run(Unknown Source)
11:02:52,266 ERROR [stderr] (Thread-114) at java.lang.Thread.run(Thread.java:745)
11:02:52,267 ERROR [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao] (Thread-114) Dao ontProcessStatus failed
11:02:52,268 ERROR [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao] (Thread-114) 0 parameters were supplied, but 8 in parameters were declared in class [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus]
11:02:52,277 ERROR [stderr] (Thread-114) edu.harvard.i2b2.common.exception.I2B2DAOException: Data access error
11:02:52,278 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao.createOntologyProcessStatus(Unknown Source)
11:02:52,292 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.delegate.CRCConceptUpdateHandler.execute(Unknown Source)
11:02:52,297 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.ws.ExecutorRunnable.run(Unknown Source)
11:02:52,298 ERROR [stderr] (Thread-114) at java.lang.Thread.run(Thread.java:745)
11:02:52,298 ERROR [stderr] (Thread-114) Caused by: org.springframework.dao.InvalidDataAccessApiUsageException: 0 parameters were supplied, but 8 in parameters were declared in class [edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus]
11:02:52,301 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameterCount(RdbmsOperation.java:436)
11:02:52,306 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.RdbmsOperation.validateParameters(RdbmsOperation.java:394)
11:02:52,309 ERROR [stderr] (Thread-114) at org.springframework.jdbc.object.SqlUpdate.update(SqlUpdate.java:167)
11:02:52,310 ERROR [stderr] (Thread-114) at edu.harvard.i2b2.ontology.dao.OntProcessStatusDao$SaveOntProcessStatus.save(Unknown Source)
11:02:52,315 ERROR [stderr] (Thread-114) ... 4 more
11:03:47,025 ERROR [edu.harvard.i2b2.ontology.ws.OntologyService] (http--0.0.0.0-9090-2) er.jobException is Data access error
11:03:47,026 INFO [edu.harvard.i2b2.ontology.ws.OntologyService] (http--0.0.0.0-9090-2) waitTime is 120000