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  1. i2b2 Core Software
  2. CORE-83

Trying to build and compile i2b2 Server on Fedora Core 20 with Wildfly 8.0.0

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.7.00-FRC
    • Fix Version/s: 1.7.01
    • Component/s: Install
    • Labels:
      None
    • Environment:
      Fedora Core 20 x64, Wildfly 8.0.0 RC1
    • Rank:
      0|i000p3:

      Description

      Cannot find stack.transport.class to deploy. See below.

      =========================================================================

        JBoss Bootstrap Environment

        JBOSS_HOME: /usr/share/wildfly

        JAVA: java

        JAVA_OPTS: -server -XX:+UseCompressedOops -Xms64m -Xmx512m -XX:MaxPermSize=256m -Djava.net.preferIPv4Stack=true -Djboss.modules.system.pkgs=org.jboss.byteman -Djava.awt.headless=true

      =========================================================================

      [0m16:19:27,372 INFO [org.jboss.modules] (main) JBoss Modules version 1.3.0.Beta3
      [0m[0m16:19:27,762 INFO [org.jboss.msc] (main) JBoss MSC version 1.2.0.Beta1
      [0m[0m16:19:27,851 INFO [org.jboss.as] (MSC service thread 1-2) JBAS015899: WildFly 8.0.0.Beta1 "WildFly" starting
      [0m[0m16:19:29,428 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment i2b2.war
      [0m[0m16:19:29,431 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015003: Found i2b2.war in deployment directory. To trigger deployment create a file called i2b2.war.dodeploy
      [0m[0m16:19:29,462 INFO [org.xnio] (MSC service thread 1-1) XNIO Version 3.1.0.CR6
      [0m[0m16:19:29,467 INFO [org.xnio.nio] (MSC service thread 1-1) XNIO NIO Implementation Version 3.1.0.CR6
      [0m[0m16:19:29,469 INFO [org.jboss.as.server] (Controller Boot Thread) JBAS015888: Creating http management service using socket-binding (management-http)
      [0m[0m16:19:29,498 INFO [org.jboss.remoting] (MSC service thread 1-1) JBoss Remoting version 4.0.0.Beta1
      [0m[0m16:19:29,599 INFO [org.jboss.as.jsf] (ServerService Thread Pool -- 39) JBAS012605: Activated the following JSF Implementations: [main]
      [0m[0m16:19:29,613 INFO [org.jboss.as.security] (ServerService Thread Pool -- 46) JBAS013171: Activating Security Subsystem
      [0m[0m16:19:29,635 INFO [org.jboss.as.clustering.infinispan] (ServerService Thread Pool -- 33) JBAS010280: Activating Infinispan subsystem.
      [0m[0m16:19:29,648 INFO [org.jboss.as.naming] (ServerService Thread Pool -- 41) JBAS011800: Activating Naming Subsystem
      [0m[0m16:19:29,657 INFO [org.jboss.as.connector.logging] (MSC service thread 1-2) JBAS010408: Starting JCA Subsystem (IronJacamar 1.1.0.Final)
      [0m[0m16:19:29,670 INFO [org.jboss.as.security] (MSC service thread 1-4) JBAS013170: Current PicketBox version=4.0.18.Final
      [0m[0m16:19:29,783 INFO [org.jboss.as.webservices] (ServerService Thread Pool -- 50) JBAS015537: Activating WebServices Extension
      [0m[0m16:19:29,812 INFO [org.jboss.as.naming] (MSC service thread 1-1) JBAS011802: Starting Naming Service
      [0m[0m16:19:29,814 INFO [org.jboss.as.mail.extension] (MSC service thread 1-3) JBAS015400: Bound mail session [java:jboss/mail/Default]
      [0m[0m16:19:29,836 INFO [org.jboss.as.connector.subsystems.datasources] (ServerService Thread Pool -- 28) JBAS010403: Deploying JDBC-compliant driver class org.h2.Driver (version 1.3)
      [0m[0m16:19:29,838 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-1) JBAS010417: Started Driver service with driver-name = h2
      [0m[0m16:19:29,855 INFO [org.wildfly.extension.undertow] (ServerService Thread Pool -- 49) JBAS017502: Undertow 1.0.0.Beta17 starting
      [0m[0m16:19:29,858 INFO [org.wildfly.extension.undertow] (MSC service thread 1-2) JBAS017502: Undertow 1.0.0.Beta17 starting
      [0m[0m16:19:30,030 INFO [org.wildfly.extension.undertow] (ServerService Thread Pool -- 49) JBAS017527: Creating file handler for path /usr/share/wildfly/welcome-content
      [0m[0m16:19:30,055 INFO [org.wildfly.extension.undertow] (MSC service thread 1-2) JBAS017525: Started server default-server.
      [0m[0m16:19:30,169 INFO [org.wildfly.extension.undertow] (MSC service thread 1-2) JBAS017531: Host default-host starting
      [0m[33m16:19:30,386 WARN [org.jboss.as.webservices] (ServerService Thread Pool -- 50) JBAS015506: Cannot load WS deployment aspects from /META-INF/stack-specific-deployment-aspects.xml
      [0m[0m16:19:30,397 INFO [org.wildfly.extension.undertow] (MSC service thread 1-1) JBAS017519: Undertow HTTP listener default listening on /127.0.0.1:8080
      [0m[0m16:19:30,447 INFO [org.jboss.ws.common.management] (MSC service thread 1-2) JBWS022052: Starting JBoss Web Services - Stack CXF Server 4.2.0.Final
      [0m[0m16:19:30,772 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-3) JBAS010400: Bound data source [java:jboss/datasources/ExampleDS]
      [0m[0m16:19:30,824 INFO [org.jboss.as.remoting] (MSC service thread 1-1) JBAS017100: Listening on 127.0.0.1:9999
      [0m[31m16:19:30,832 ERROR [org.jboss.as.domain.http.api.undertow] (MSC service thread 1-3) JBAS015102: Unable to load console module for slot main, disabling console
      [0m[0m16:19:30,841 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015876: Starting deployment of "ojdbc6.jar" (runtime-name: "ojdbc6.jar")
      [0m[0m16:19:30,843 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015876: Starting deployment of "crc-ds.xml" (runtime-name: "crc-ds.xml")
      [0m[0m16:19:30,846 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015876: Starting deployment of "i2b2.war" (runtime-name: "i2b2.war")
      [0m[0m16:19:30,847 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015876: Starting deployment of "postgresql-9.2-1002.jdbc4.jar" (runtime-name: "postgresql-9.2-1002.jdbc4.jar")
      [0m[0m16:19:30,848 INFO [org.jboss.as.server.deployment] (MSC service thread 1-2) JBAS015876: Starting deployment of "sqljdbc4.jar" (runtime-name: "sqljdbc4.jar")
      [0m[0m16:19:30,859 INFO [org.jboss.as.server.deployment.scanner] (MSC service thread 1-1) JBAS015012: Started FileSystemDeploymentService for directory /usr/share/wildfly/standalone/deployments
      [0m[0m16:19:32,169 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010404: Deploying non-JDBC-compliant driver class org.postgresql.Driver (version 9.2)
      [0m[0m16:19:32,178 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010417: Started Driver service with driver-name = postgresql-9.2-1002.jdbc4.jar
      [0m[0m16:19:32,352 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class oracle.jdbc.OracleDriver (version 11.2)
      [0m[0m16:19:32,377 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class com.microsoft.sqlserver.jdbc.SQLServerDriver (version 4.0)
      [0m[0m16:19:32,379 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010417: Started Driver service with driver-name = ojdbc6.jar
      [0m[0m16:19:32,404 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-1) JBAS010417: Started Driver service with driver-name = sqljdbc4.jar
      [0m[0m16:19:32,406 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-4) JBAS010400: Bound data source [java:/QueryToolDemoDS]
      [0m[31m16:19:32,407 ERROR [org.jboss.msc.service] (MSC service thread 1-4) MSC000002: Invocation of listener "org.jboss.as.connector.subsystems.datasources.DataSourceStatisticsListener@4e0adfc3" failed: java.lang.IllegalArgumentException: JBAS014809: A node is already registered at '(deployment => *)(subsystem => datasources)(data-source => *)(statistics => jdbc)'
      at org.jboss.as.controller.registry.ConcreteResourceRegistration.registerSubModel(ConcreteResourceRegistration.java:145) [wildfly-controller-8.0.0.Beta1.jar:8.0.0.Beta1]
      at org.jboss.as.controller.registry.AbstractResourceRegistration.registerSubModel(AbstractResourceRegistration.java:90) [wildfly-controller-8.0.0.Beta1.jar:8.0.0.Beta1]
      at org.jboss.as.connector.subsystems.datasources.DataSourceStatisticsListener.transition(DataSourceStatisticsListener.java:72) [wildfly-connector-8.0.0.Beta1.jar:8.0.0.Beta1]
      at org.jboss.msc.service.ServiceControllerImpl.invokeListener(ServiceControllerImpl.java:1531) [jboss-msc.jar:1.2.0.Beta1]
      at org.jboss.msc.service.ServiceControllerImpl.access$2800(ServiceControllerImpl.java:51) [jboss-msc.jar:1.2.0.Beta1]
      at org.jboss.msc.service.ServiceControllerImpl$ListenerTask.run(ServiceControllerImpl.java:2093) [jboss-msc.jar:1.2.0.Beta1]
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) [rt.jar:1.7.0_45]
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) [rt.jar:1.7.0_45]
      at java.lang.Thread.run(Thread.java:744) [rt.jar:1.7.0_45]

      [0m[0m16:19:32,409 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-4) JBAS010400: Bound data source [java:/CRCBootStrapDS]
      [0m[31m16:19:32,861 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-1) MSC000001: Failed to start service jboss.deployment.unit."i2b2.war".INSTALL: org.jboss.msc.service.StartException in service jboss.deployment.unit."i2b2.war".INSTALL: JBAS018733: Failed to process phase INSTALL of deployment "i2b2.war"
      at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:166) [wildfly-server-8.0.0.Beta1.jar:8.0.0.Beta1]
      at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1942) [jboss-msc.jar:1.2.0.Beta1]
      at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1875) [jboss-msc.jar:1.2.0.Beta1]
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) [rt.jar:1.7.0_45]
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) [rt.jar:1.7.0_45]
      at java.lang.Thread.run(Thread.java:744) [rt.jar:1.7.0_45]
      Caused by: java.lang.IllegalStateException: JBAS015532: Cannot obtain deployment property: stack.transport.class
      at org.jboss.as.webservices.tomcat.WebMetaDataModifier.getTransportClassName(WebMetaDataModifier.java:127)
      at org.jboss.as.webservices.tomcat.WebMetaDataModifier.configureEndpoints(WebMetaDataModifier.java:77)
      at org.jboss.as.webservices.tomcat.WebMetaDataModifier.modify(WebMetaDataModifier.java:65)
      at org.jboss.as.webservices.tomcat.WebMetaDataModifyingDeploymentAspect.start(WebMetaDataModifyingDeploymentAspect.java:39)
      at org.jboss.as.webservices.deployers.AspectDeploymentProcessor.deploy(AspectDeploymentProcessor.java:75)
      at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:159) [wildfly-server-8.0.0.Beta1.jar:8.0.0.Beta1]
      ... 5 more

      [0m[31m16:19:32,877 ERROR [org.jboss.as.controller.management-operation] (Controller Boot Thread) JBAS014613: Operation ("deploy") failed - address: ([("deployment" => "i2b2.war")]) - failure description: {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"i2b2.war\".INSTALL" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"i2b2.war\".INSTALL: JBAS018733: Failed to process phase INSTALL of deployment \"i2b2.war\"
          Caused by: java.lang.IllegalStateException: JBAS015532: Cannot obtain deployment property: stack.transport.class"}}
      [0m[0m16:19:32,923 INFO [org.jboss.as.server] (ServerService Thread Pool -- 29) JBAS018559: Deployed "postgresql-9.2-1002.jdbc4.jar" (runtime-name : "postgresql-9.2-1002.jdbc4.jar")
      [0m[0m16:19:32,926 INFO [org.jboss.as.server] (ServerService Thread Pool -- 29) JBAS018559: Deployed "crc-ds.xml" (runtime-name : "crc-ds.xml")
      [0m[0m16:19:32,926 INFO [org.jboss.as.server] (ServerService Thread Pool -- 29) JBAS018559: Deployed "ojdbc6.jar" (runtime-name : "ojdbc6.jar")
      [0m[0m16:19:32,927 INFO [org.jboss.as.server] (ServerService Thread Pool -- 29) JBAS018559: Deployed "sqljdbc4.jar" (runtime-name : "sqljdbc4.jar")
      [0m[0m16:19:32,927 INFO [org.jboss.as.server] (ServerService Thread Pool -- 29) JBAS018559: Deployed "i2b2.war" (runtime-name : "i2b2.war")
      [0m[0m16:19:32,928 INFO [org.jboss.as.controller] (Controller Boot Thread) JBAS014774: Service status report
      JBAS014777: Services which failed to start: service jboss.deployment.unit."i2b2.war".INSTALL: org.jboss.msc.service.StartException in service jboss.deployment.unit."i2b2.war".INSTALL: JBAS018733: Failed to process phase INSTALL of deployment "i2b2.war"

      [0m[0m16:19:32,956 INFO [org.jboss.as] (Controller Boot Thread) JBAS015961: Http management interface listening on http://127.0.0.1:9990/management
      [0m[0m16:19:32,956 INFO [org.jboss.as] (Controller Boot Thread) JBAS015951: Admin console listening on http://127.0.0.1:9990
      [0m[31m16:19:32,956 ERROR [org.jboss.as] (Controller Boot Thread) JBAS015875: WildFly 8.0.0.Beta1 "WildFly" started (with errors) in 5889ms - Started 335 of 373 services (1 services failed or missing dependencies, 72 services are lazy, passive or on-demand)
      [0m[0m16:19:33,191 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015877: Stopped deployment i2b2.war (runtime-name: i2b2.war) in 9ms
      [0m[0m16:19:33,232 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS018558: Undeployed "i2b2.war" (runtime-name: "i2b2.war")
      [0m[0m16:19:33,232 INFO [org.jboss.as.controller] (DeploymentScanner-threads - 2) JBAS014774: Service status report
      JBAS014777: Services which failed to start: service jboss.deployment.unit."i2b2.war".INSTALL

      [0m[0m16:19:38,005 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 2) JBAS015003: Found i2b2.war in deployment directory. To trigger deployment create a file called i2b2.war.dodeploy
      [0m[0m16:23:22,570 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-2) JBAS010418: Stopped Driver service with driver-name = sqljdbc4.jar
      [0m[0m16:23:22,572 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010418: Stopped Driver service with driver-name = postgresql-9.2-1002.jdbc4.jar
      [0m[0m16:23:22,606 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-4) JBAS010409: Unbound data source [java:jboss/datasources/ExampleDS]
      [0m[0m16:23:22,612 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-3) JBAS010409: Unbound data source [java:/CRCBootStrapDS]
      [0m[0m16:23:22,614 INFO [org.wildfly.extension.undertow] (MSC service thread 1-1) JBAS017532: Host default-host stopping
      [0m[0m16:23:22,628 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-1) JBAS010418: Stopped Driver service with driver-name = ojdbc6.jar
      [0m[0m16:23:22,629 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-1) JBAS010418: Stopped Driver service with driver-name = h2
      [0m[0m16:23:22,629 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015877: Stopped deployment postgresql-9.2-1002.jdbc4.jar (runtime-name: postgresql-9.2-1002.jdbc4.jar) in 42ms
      [0m[0m16:23:22,635 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015877: Stopped deployment sqljdbc4.jar (runtime-name: sqljdbc4.jar) in 56ms
      [0m[0m16:23:22,640 INFO [org.wildfly.extension.undertow] (MSC service thread 1-3) JBAS017521: Undertow HTTP listener default suspending
      [0m[0m16:23:22,640 INFO [org.wildfly.extension.undertow] (MSC service thread 1-3) JBAS017520: Undertow HTTP listener default stopped, was bound to /127.0.0.1:8080
      [0m[0m16:23:22,646 INFO [org.wildfly.extension.undertow] (MSC service thread 1-4) JBAS017506: Undertow 1.0.0.Beta17 stopping
      [0m[0m16:23:22,650 INFO [org.jboss.as.server.deployment] (MSC service thread 1-2) JBAS015877: Stopped deployment ojdbc6.jar (runtime-name: ojdbc6.jar) in 72ms
      [0m[0m16:23:22,654 INFO [org.jboss.as.server.deployment] (MSC service thread 1-3) JBAS015877: Stopped deployment crc-ds.xml (runtime-name: crc-ds.xml) in 74ms
      [0m[0m16:23:22,659 INFO [org.jboss.as] (MSC service thread 1-1) JBAS015950: WildFly 8.0.0.Beta1 "WildFly" stopped in 69ms
      [0m

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                Updated:
                Resolved:

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