Java 1.5 is reaching End Of Life on Oct 30, 2009. When deploying i2b2 on JDK 1.6 (1.6.0_13) with JBoss 4.2.3.GA-jdk6, the older Axis2 1.1 release is no longer compatible. The solution is to upgrade to Axis2 1.1.1.
To reproduce:
1. Install i2b2 from source according to instructions
2. Go to
http://tomcat:port/axis2/services/listServices
3. Output show exception:
Exception report
message
description The server encountered an internal error () that prevented it from fulfilling this request.
exception
javax.servlet.ServletException: Servlet.init() for servlet AxisServlet threw exception
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:174)
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:874)
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665)
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528)
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
java.lang.Thread.run(Thread.java:619)
root cause
javax.xml.stream.FactoryConfigurationError: Provider javax.xml.stream.XMLInputFactory could not be instantiated: java.lang.InstantiationException
javax.xml.stream.XMLInputFactory.newInstance(XMLInputFactory.java:158)
org.apache.axiom.om.util.StAXUtils.getXMLInputFactory(StAXUtils.java:40)
org.apache.axiom.om.util.StAXUtils.createXMLStreamReader(StAXUtils.java:66)
org.apache.axis2.deployment.DescriptionBuilder.buildOM(DescriptionBuilder.java:86)
org.apache.axis2.deployment.AxisConfigBuilder.populateConfig(AxisConfigBuilder.java:58)
org.apache.axis2.deployment.DeploymentEngine.populateAxisConfiguration(DeploymentEngine.java:690)
org.apache.axis2.deployment.WarBasedAxisConfigurator.<init>(WarBasedAxisConfigurator.java:129)
org.apache.axis2.transport.http.AxisServlet.initConfigContext(AxisServlet.java:373)
org.apache.axis2.transport.http.AxisServlet.init(AxisServlet.java:317)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:174)
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:874)
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665)
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528)
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
java.lang.Thread.run(Thread.java:619)
created issue -
21/May/09 11:51 AM
made changes -
27/Oct/11 1:44 PM
Field
Original Value
New Value
Resolution
Fixed
[ 1
]
Status
Open
[ 1
]
Resolved
[ 5
]
made changes -
22/May/14 5:58 PM
Workflow
classic default workflow
[ 10023
]
i2b2 Issues
[ 10330
]
made changes -
23/May/14 2:09 PM
Status
Resolved
[ 5
]
Closed
[ 6
]
made changes -
29/May/14 4:07 PM
Workflow
i2b2 Issues
[ 10330
]
i2b2 Issues Workflow
[ 10491
]
made changes -
05/Jun/14 4:56 PM
Component/s
Install
[ 10053
]
Component/s
PM Cell
[ 10055
]
Component/s
PM Cell
[ 10002
]
Key
LEOPARD-9
CORE-7
Project
i2b2
[ 10000
]
i2b2 Core Project
[ 10034
]
Affects Version/s
1.3.00
[ 10130
]
Affects Version/s
1.3.00
[ 10000
]
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Minor