Details
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Bug
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Status: Closed
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Major
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Resolution: Fixed
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1.7.09
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None
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For large OMOP ontologies (i.e SNOMED) there may be a delay before seeing the observation fact. The code has to look up the concept by code ... this can take a while with large ontologies
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tested and verified details c an be seen in the i2b2 timeline which clicking on the tick mark.
Description
In i2b2 Web Client when a user double clicks on a tick mark in the timeline, additional details about the observation will display.
However, in OMOP the data schema is setup differently in that there is no "OBSERVATION_FACT" table. The get_observationfact_by_primary_key (getIbservationfact_byPrimaryKey) service is trying to call a table that does not exist. This results in the following exception being returned from the server:
"Invalid object name 'i2b2omop.dbo.observation_fact'"
However, in OMOP the data schema is setup differently in that there is no "OBSERVATION_FACT" table. The get_observationfact_by_primary_key (getIbservationfact_byPrimaryKey) service is trying to call a table that does not exist. This results in the following exception being returned from the server:
"Invalid object name 'i2b2omop.dbo.observation_fact'"
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Assignee | Lori Phillips [ lcp5 ] |
| Status | New [ 10000 ] | Open [ 1 ] |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Developer Notes | For large OMOP ontologies (i.e SNOMED) there may be a delay before seeing the observation fact. The code has to look up the concept by code ... this can take a while with large ontologies | |
| Status | In Progress [ 3 ] | Ready to Test [ 10001 ] |
| Assignee | Lori Phillips [ lcp5 ] | Janice Donahoe [ jmd86 ] |
| Fix Version/s | 1.7.09 [ 10306 ] |
| Status | Ready to Test [ 10001 ] | Testing [ 10002 ] |
| Testing Notes | tested and verified details c an be seen in the i2b2 timeline which clicking on the tick mark. | |
| Status | Testing [ 10002 ] | Testing [ 10002 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Testing [ 10002 ] | Resolved [ 5 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |