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  1. i2b2 Core Software
  2. CORE-21

i2b2 v1.4 - CRC BUILD Failed

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Details

    • Bug
    • Status: Closed
    • Major
    • Resolution: Fixed
    • 1.4.00
    • 1.6.00
    • CRC Cell, Install, VM Image
    • None
    • LINUX VM - JAVA 1.6
    • Rank:
      0|i001av:

    Description

      Below is the error message when running the ant target both on the crcloader and the crc. I have installed v1.4 on a local wintel box. We had v1.3 running on a LINUX VM, I was going through the UPGRADE process.

      The crcloader ant target shows BUILD SUCCESSFUL but I thougth maybe it's warnings would be of interest (if related).

      I have reviewed the config files and I believe I have them set correctly.

      java version "1.6.0_17"
      Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
      Java HotSpot(TM) Client VM (build 14.3-b01, mixed mode, sharing)


      ...---......---......---......---......---......---......---......---......---......---...
      CRC LOADER

      compile:
          [javac] Compiling 216 source files to /i2-v1.4/src/edu.harvard.i2b2.crc.loader/classes
          [javac] /i2-v1.4/src/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/security/HighEncryption.java:17: warning: e
          [javac] import sun.misc.BASE64Decoder;
          [javac] ^
          [javac] /i2-v1.4/src/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/security/RijndaelAlgorithm.java:102: warnie
          [javac] return new String(new sun.misc.BASE64Encoder().encodeBuffer(encrypt(source.getBytes("UTF-8"))));
          [javac] ^
          [javac] /i2-v1.4/src/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/security/RijndaelAlgorithm.java:130: warnie
          [javac] new sun.misc.BASE64Decoder().decodeBuffer(source)), "UTF-8");
          [javac] ^
          [javac] Note: /i2-v1.4/src/edu.harvard.i2b2.crc.loader/src/test/edu/harvard/i2b2/crc/loader/ws/CRCAxisAbstract.java uses or overrides a.
          [javac] Note: Recompile with -Xlint:deprecation for details.
          [javac] Note: Some input files use unchecked or unsafe operations.
          [javac] Note: Recompile with -Xlint:unchecked for details.
          [javac] 3 warnings

      dist:
           [echo] CRCLoader: Creating the ejb archive package!
            [jar] Building jar: /i2-v1.4/src/edu.harvard.i2b2.crc.loader/dist/CRCLoader-EJB.jar

      common_init:

      common-classpath:

      init:

      compile:

      dist-server:
           [echo] CRCLoader: Creating the server archive package!
            [jar] Building jar: /i2-v1.4/src/edu.harvard.i2b2.crc.loader/dist/CRCLoader-Server.jar

      axis2aar:
            [jar] Building jar: /i2-v1.4/src/edu.harvard.i2b2.crc.loader/dist/CRCLoader.aar

      fr-ejb:
            [jar] Building jar: /i2-v1.4/src/edu.harvard.i2b2.crc.loader/dist/CRCLoaderFR-EJB.jar

      BUILD SUCCESSFUL
      Total time: 30 seconds
      [edu.harvard.i2b2.crc.loader]
      ...---......---......---......---......---......---......---......---......---......---...
      ...---......---......---......---......---......---......---......---......---......---...
      CRC COMPILE
      compile:
          [javac] Compiling 463 source files to /i2-v1.4/src/edu.harvard.i2b2.crc/classes
          [javac] /i2-v1.4/src/edu.harvard.i2b2.crc/src/server/edu/harvard/i2b2/crc/ejb/analysis/QueryExecutor.java:30: cannot find symbol
          [javac] symbol : method getVersion()
          [javac] location: class edu.harvard.i2b2.crc.datavo.setfinder.query.AnalysisDefinitionType
          [javac] String version = analysisDefinition.getVersion();
          [javac] ^
          [javac] /i2-v1.4/src/edu.harvard.i2b2.crc/src/server/edu/harvard/i2b2/crc/ejb/analysis/StartAnalysis.java:91: cannot find symbol
          [javac] symbol : method getVersion()
          [javac] location: class edu.harvard.i2b2.crc.datavo.setfinder.query.AnalysisDefinitionType
          [javac] .getVersion(), msgHelper.getProjectId());
          [javac] ^
          [javac] /i2-v1.4/src/edu.harvard.i2b2.crc/src/server/edu/harvard/i2b2/crc/quartz/AnalysisJobStarter.java:86: cannot find symbol
          [javac] symbol : method getVersion()
          [javac] location: class edu.harvard.i2b2.crc.datavo.setfinder.query.AnalysisDefinitionType
          [javac] String version = analysisDefType.getVersion();
          [javac] ^
          [javac] Note: Some input files use or override a deprecated API.
          [javac] Note: Recompile with -Xlint:deprecation for details.
          [javac] Note: Some input files use unchecked or unsafe operations.
          [javac] Note: Recompile with -Xlint:unchecked for details.
          [javac] 3 errors

      BUILD FAILED
      ...---......---......---......---......---......---......---......---......---......---...

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            mem61 Mike Mendis
            beninato@ohsu.edu Peter Beninato
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              Created:
              Updated:
              Resolved: