Matthew Hoag added a comment - 18/Sep/15 4:58 PM Query that causes the problem (I know this is KU specific, but note the temporal constraints are there)

Matthew Hoag added a comment - 18/Sep/15 4:59 PM JConsole paired with the Log of the error

Matthew Hoag added a comment - 18/Sep/15 5:00 PM - edited Log associated with the JConsole Picture of the OOM {noformat} 15:07:51,749 DEBUG [edu.harvard.i2b2.crc.dao.CRCDAO] (http--0.0.0.0-9090-6) ********* Total time for patient sql ****11 15:07:51,752 DEBUG [edu.harvard.i2b2.crc.dao.CRCDAO] (http--0.0.0.0-9090-6) ********* Total time for patient objects ****11 15:07:51,753 DEBUG [edu.harvard.i2b2.common.util.jaxb.JAXBUtil] (http--0.0.0.0-9090-6) object.toString()edu.harvard.i2b2.crc.datavo.i2b2message.RequestMessageType 15:08:02,375 ERROR [edu.harvard.i2b2.crc.delegate.pdo.PdoQueryRequestDelegate] (http--0.0.0.0-9090-6) Throwable: java.lang.OutOfMemoryError: Java heap space 15:08:02,377 DEBUG [edu.harvard.i2b2.common.util.jaxb.JAXBUtil] (http--0.0.0.0-9090-6) object.toString()edu.harvard.i2b2.crc.datavo.i2b2message.RequestMessageType 15:08:02,377 DEBUG [edu.harvard.i2b2.crc.axis2.QueryService] (http--0.0.0.0-9090-6) Response in service<?xml version="1.0" encoding="UTF-8" standalone="yes"?> <ns5:response xmlns:ns2=" http://www.i2b2.org/xsd/hive/pdo/1.1/ " xmlns:ns4=" http://www.i2b2.org/xsd/cell/crc/psm/1.1/ " xmlns:ns3=" http://www.i2b2.org/xsd/cell/crc/pdo/1.1/ " xmlns:ns9=" http://www.i2b2.org/xsd/cell/ont/1.1/ " xmlns:ns5=" http://www.i2b2.org/xsd/hive/msg/1.1/ " xmlns:ns6=" http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/ " xmlns:ns10=" http://www.i2b2.org/xsd/hive/msg/result/1.1/ " xmlns:ns7=" http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/ " xmlns:ns8=" http://www.i2b2.org/xsd/cell/pm/1.1/ ">     <message_header>         <i2b2_version_compatible>1.1</i2b2_version_compatible>         <hl7_version_compatible>2.4</hl7_version_compatible>         <sending_application>             <application_name>CRC Cell</application_name>             <application_version>1.7</application_version>         </sending_application>         <sending_facility>             <facility_name>i2b2 Hive</facility_name>         </sending_facility>         <receiving_application>             <application_name>i2b2_QueryTool</application_name>             <application_version>1.6</application_version>         </receiving_application>         <receiving_facility>             <facility_name>i2b2 Hive</facility_name>         </receiving_facility>         <message_control_id>             <instance_num>1</instance_num>         </message_control_id>         <project_id>BlueHeron</project_id>     </message_header>     <response_header>         <info>Log information</info>         <result_status>             <status type="ERROR">java.lang.OutOfMemoryError: Java heap space </status>             <polling_url interval_ms="100"/>         </result_status>     </response_header> </ns5:response> {noformat}

Matthew Hoag added a comment - 18/Sep/15 5:07 PM - edited After looking at the log and then the source code, I am guessing that the error has a stack trace like: JAXBUtil:128 I2B2MessageResponseFactory:115 PdoQueryRequestDelegate:220 Specifically, I believe `marshaller.marshal(element, strWriter)` is causing the OOM, when middle tier app is dumping the XML object into a StringWriter. I can't know for sure because the stack trace of error is getting eaten by the XML response and doesn't make it into the debug log.

Janice Donahoe added a comment - 24/Oct/16 3:36 PM Hi Matthew, are you still having this problem? If so, which version of i2b2 are you using?

Janice Donahoe added a comment - 30/Jan/17 12:10 PM To fix this issue you need to increase the memory of your JAVA RUNTIME.