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Installation Guide
OMOP
OMOP
Created by
Janice Donahoe
, last modified on
May 24, 2017
Installation Guide for i2b2 on OMOP
Table of Contents
Introduction
Requirements
Data Installation
Data Installation Overview
Directory Structure and Schema Mapping
Extract i2b2 data package for OMOP
Crcdata Tables
Working Directory - crcdata
Set Database Properties - crcdata
Create crcdata tables
Create crcdata stored procedures
Load crcdata tables
Create OMOP views
Metadata Tables
Working Directory - metadata
Set Database Properties - metadata
Create metadata tables
Load metadata tables
Workdata Tables
Working Directory - workdata
Set Database Properties - workdata
Create workdata tables
Load workdata tables
Next Steps
Software Configuration
Update CRC Properties File
Configure Data Sources
Update DB Lookup Tables
Setup a Project
Additional Resources
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