Details

    • Documentation
    • Status: Closed
    • Major
    • Resolution: Completed
    • 1.7.00-RC1
    • 1.7.01
    • Documentation, Install
    • None
    • VMware image of Centos 6.4

    Description

      I noted the following issues while using the i2b2 Installation Guide version 1.7.0 with a Postgres database on Linux

      - Ant is used as a dependency during the installation , but not listed as Prerequisite Software to obtain in section 1.1
      - No instructions on how to run the pgsql command in section 2.4.1 , found that to run it "sudo -u postgres psql"
      - In 2.5 and subsequent sections I needed to run the following commands BEFORE creating the tables and loading data otherwise the tables were created in teh public scheama :

       grant all on schema i2b2metadata to i2b2metadata;
       grant all on schema i2b2demodata to i2b2demodata;
      etc ...

      In section 2.5.2 I could not use the db.url that contained localhost but rather needed to specify the ip address on the machine I was loading on

      db.url=jdbc:postgresql://###.###.###.###:5432/postgres?searchpath=i2b2pm

      Also no instructions to set up Postgres for network access via the port ( which is disabled by default ) . I used http://www.cyberciti.biz/tips/postgres-allow-remote-access-tcp-connection.html

      In step 2.10 the instructions go on about setting up a schema with i2b2im and the same userid . The instructions omitted this schema and user id in step 2.2.2 and 2.2.3

      Attachments

        Activity

          Also in addition to editing the following files as root :

          /var/lib/pgsql/9.1/data/postgresql.conf and pg_hba.conf

          to enable port 5432 support

          I needed to turn off the CentOS Firewall
          kowalskg George Kowalski added a comment - Also in addition to editing the following files as root : /var/lib/pgsql/9.1/data/postgresql.conf and pg_hba.conf to enable port 5432 support I needed to turn off the CentOS Firewall
          Didn't make it into the final 1.7.0 documentation. The i2b2im userid is still not referenced before section 2.10 in the Data Installation Guide.
          kowalskg George Kowalski added a comment - Didn't make it into the final 1.7.0 documentation. The i2b2im userid is still not referenced before section 2.10 in the Data Installation Guide.
          A new installation guide was written and made available to users on the community i2b2 wiki page (https://community.i2b2.org/wiki/display/getstarted/i2b2+Installation+Guide). The concerns addressed in this issue are addressed in the new guide.
          jmd86 Janice Donahoe added a comment - A new installation guide was written and made available to users on the community i2b2 wiki page ( https://community.i2b2.org/wiki/display/getstarted/i2b2+Installation+Guide ). The concerns addressed in this issue are addressed in the new guide.

          People

            jmd86 Janice Donahoe
            kowalskg George Kowalski
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            Dates

              Created:
              Updated:
              Resolved: