I2b2 compilation of CRC Cell fails

Installing version 1.6.06 on LInux machine. Get to step 2.1.6 of the CRC_Installation_Guide.pdf and run:

ant -f master_build.xml clean build-all deploy

 Get the following error :

compile:
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/build.xml:78: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 239 source files to /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/classes
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/CRCLoaderUtil.java:33: cannot find symbol
    [javac] symbol : class FRLocalHome
    [javac] location: package edu.harvard.i2b2.crc.loader.ejb.fr
    [javac] import edu.harvard.i2b2.crc.loader.ejb.fr.FRLocalHome;
    [javac] ^
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/CRCLoaderUtil.java:142: cannot find symbol
    [javac] symbol : class FRLocalHome
    [javac] location: class edu.harvard.i2b2.crc.loader.util.CRCLoaderUtil
    [javac] public FRLocalHome getFRBeanLocalHome() throws I2B2Exception,
    [javac] ^
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/security/HighEncryption.java:17: warning: sun.misc.BASE64Decoder is Sun proprietary API and may be removed in a future release
    [javac] import sun.misc.BASE64Decoder;
    [javac] ^
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/ejb/DataMartLoaderBeanMDB.java:46: cannot find symbol
    [javac] symbol : class FRLocal
    [javac] location: package edu.harvard.i2b2.crc.loader.ejb.fr
    [javac] import edu.harvard.i2b2.crc.loader.ejb.fr.FRLocal;
    [javac] ^
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/CRCLoaderUtil.java:144: cannot find symbol
    [javac] symbol : class FRLocalHome
    [javac] location: class edu.harvard.i2b2.crc.loader.util.CRCLoaderUtil
    [javac] return (FRLocalHome) serviceLocator
    [javac] ^
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/security/RijndaelAlgorithm.java:102: warning: sun.misc.BASE64Encoder is Sun proprietary API and may be removed in a future release
    [javac] return new String(new sun.misc.BASE64Encoder().encodeBuffer(encrypt(source.getBytes("UTF-8"))));
    [javac] ^
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/util/security/RijndaelAlgorithm.java:130: warning: sun.misc.BASE64Decoder is Sun proprietary API and may be removed in a future release
    [javac] new sun.misc.BASE64Decoder().decodeBuffer(source)), "UTF-8");
    [javac] ^
    [javac] /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/server/edu/harvard/i2b2/crc/loader/ejb/DataMartLoaderBeanMDB.java:275: cannot find symbol
    [javac] symbol : class FRLocal
    [javac] location: class edu.harvard.i2b2.crc.loader.ejb.DataMartLoaderBeanMDB
    [javac] FRLocal testLocal = CRCLoaderUtil.getInstance()
    [javac] ^
    [javac] Note: /home/jboss/src/Server/edu.harvard.i2b2.crc.loader/src/test/edu/harvard/i2b2/crc/loader/ws/CRCAxisAbstract.java uses or overrides a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 5 errors
    [javac] 3 warnings

BUILD FAILED
/home/jboss/src/Server/edu.harvard.i2b2.crc/master_build.xml:12: The following error occurred while executing this line:
/home/jboss/src/Server/edu.harvard.i2b2.crc.loader/build.xml:78: Compile failed; see the compiler error output for details.