Directory Structure for the i2b2 demo data packageOnce you have extracted the files from the i2b2 data package you will notice the following directory structure in your i2b2 data directory: <span style="font-size:15px;font-weight:bold">Main Directory for New Data Installs:</span>
<i>YOUR_I2B2_DATA_DIR</i>\i2b2_omop_data\
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Directory | Description |
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crcdata | Contains the data installation files for the Data Repository (CRC) Cell. These CRC tables are specific to the i2b2 on OMOP project. | metadata | Contains the data installation files for the Ontology (ONT) Cell. These tables are also specific to the i2b2 on OMOP project. | workdata | Contains the data installation files for the Workplace Framework (Work) Cell. These tables are not specific to the i2b2 on OMOP project. |
Remove the following Directory | Description |
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Crcdata | Contains the data installation files for the Data Repository (CRC) Cell. | Hivedata | Contains the data installation files for the i2b2 Hive. | Imdata | Contains the data installation files for the Identity Management (IM) Cell. | Metadata | Contains the data installation files for the Ontology Management (ONT) Cell. | Pmdata | Contains the data installation files for the Project Management (PM) Cell. | Workdata | Contains the data installation files for the Workplace Framework (WORK) Cell. |
In each of the above directories you will find the following:
Fix the following Directory or File | Description |
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Scripts | This directory contains all the scripts used during the data installation (create and load) | db.properties | Properties file to define the database setup parameters (type, username, driver, etc.) |
Schema MappingAs stated previous the main directory for your data installation is YOUR_I2B2_DATA_DIR\edu.harvard.i2b2.data\Release_1-7\NewInstall and within it are several folders contains the install scripts. These folder and the appropriate schema to which they are mapped are outlined in the following table. Directory Folder | Schema | Project |
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Crcdata | i2b2demodata | Demo | Hivedata | i2b2hive | | Imdata | i2b2imdata | | Metadata | i2b2metadata | Demo | Pmdata | i2b2pm | | Workdata | i2b2workdata | Demo |
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