The first eight columns are as per the GVF standard and represent:
We are also able to process data provided in GVF version 1.05 or 1.06.
The first eight columns are as per the GVF standard and represent:
Chromosome
Source (unused)
*Sequence Ontology type
*The following Sequence Ontology types are recognized by this tool:
SNV, MNP, complex_substitution, insertion, inversion, deletion, indel, copy_number_variation, gap
Start location
End location
Score (unused)
Strand
Phase (unused)
The last column is a series of value/type pairs. The following are currently recognized by the tool and itemized for i2b2: Variant_feature, Gene and Genotype.