The PM cell needs to communicate with your i2b2 database and in order to do this it needs to know where the tables for the pmdata reside. Therefore the third and final step in the cell configuration process is to configure the data sources for the PM Cell. This information is configured in the pm-ds.xml file.
When configuring your data sources you want to make sure you edit the following:
The following steps define how to configure your data sources for the PM Cell.
1. The pm-ds.xml file is located in the following directory: |
YOUR_I2B2_SRC_DIR\edu.harvard.i2b2.pm\etc\jboss |
2. Open the pm-ds.xml file to configure your data sources. |
<datasource jta="false" jndi-name="java:/PMBootStrapDS" pool-name="PMBootStrapDS" enabled="true" use-ccm="false"> <connection-url>jdbc:oracle:thin:@localhost:1521:xe</connection-url> <driver-class>oracle.jdbc.OracleDriver</driver-class> <driver>ojdbc6.jar</driver> <security> <user-name>i2b2pm</user-name> <password>demouser</password> </security> <validation> <validate-on-match>false</validate-on-match> <background-validation>false</background-validation> </validation> <statement> <share-prepared-statements>false</share-prepared-statements> </statement> </datasource> |
<datasource jta="false" jndi-name="java:/PMBootStrapDS" pool-name="PMBootStrapDS" enabled="true" use-ccm="false"> <connection-url>jdbc:postgresql://localhost:5432/i2b2</connection-url> <driver-class>org.postgresql.Driver</driver-class> <driver>postgresql-9.2-1002.jdbc4.jar</driver> <security> <user-name>i2b2pm</user-name> <password>demouser</password> </security> <validation> <validate-on-match>false</validate-on-match> <background-validation>false</background-validation> </validation> <statement> <share-prepared-statements>false</share-prepared-statements> </statement> </datasource> |
<datasource jta="false" jndi-name="java:/PMBootStrapDS" pool-name="PMBootStrapDS" enabled="true" use-ccm="false"> <connection-url>jdbc:sqlserver://localhost:1433</connection-url> <driver-class>com.microsoft.sqlserver.jdbc.SQLServerDriver</driver-class> <driver>sqljdbc4.jar</driver> <security> <user-name>i2b2pm</user-name> <password>demouser</password> </security> <validation> <valid-connection-checker class-name="org.jboss.jca.adapters.jdbc.extensions.mssql.MSSQLValidConnectionChecker"></valid-connection-checker> <validate-on-match>false</validate-on-match> </validation> <statement> <share-prepared-statements>false</share-prepared-statements> </statement> </datasource> |
3. Save the changes and close the file. |