Genome Variant Format (GVF)
We are also able to process data provided in GVF version 1.05 or 1.06.
The first eight columns are as per the GVF standard and represent:
*Sequence Ontology type
*The following Sequence Ontology types are recognized by this tool:
SNV, MNP, complex_substitution, insertion, inversion, deletion, indel, copy_number_variation, gap
The last column is a series of value/type pairs.
The following are currently recognized by the tool and itemized for i2b2: Variant_feature, Gene and Genotype.