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Version Information

Current Version:1.7.09c
Release Date:December 6, 2017
License:i2b2 Open Source License

Download

Descriptioni2b2 Released VersionMinimum Version RequiredDownload LinkRequirements
Files to upgrade the i2b2 server to 1.7.09c.1.7.09c1.7.05 i2b2upgrade-1705-to-1709c.zipSee Technical Details section on the i2b2 Upgrades page.

Upgrade Notes

  • Release 1.7.09 had changes to the crc.properties file. Since some sites might be upgrading from 1.7.08 or earlier, we have kept the steps to update the crc.properties files in these updgrade notes. However, if you are already on 1.7.09, 1.7.09a or higher you will skip the step to modify the crc.properties file as you have already done this step.
  • Release 1.7.09c contains changes to the i2b2 Web Client. Therefore in addition to the upgrade zip file you also need to download the i2b2webclient-1709c.zip file from the i2b2.org/software website. 
  • Because this release contains Web Client changes, the i2b2 Admin module that resides on the i2b2 server will also need to be updated. The Web Client and Admin share code and although  none of the changes are specific to the Admin, this update in necessary to make sure the two applications remain in sync.

 

 

Upgrade Instructions

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Knowing some sites have remained on JBoss 7 while some have upgraded to WildFly 10, we have gone ahead and provided Step-by-Step Instructions for both scenarios. For the most part the overall process is very similar. What is different, is the path in which the files reside. Expand the box below to see an example of the differences between the two path names.

Example Paths to i2b2.war
JBoss 7 path
/opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/
WildFly 10 path
/opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/

Step-by-Step Instructions for JBoss

Stop JBoss

Linux Example
$ /opt/jboss-as-7.1.1.Final/bin/jboss-cli.sh --connect command=:shutdown

Backup your existing i2b2.war directory

Linux

On Linux, make a copy of /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/jboss-as-7.1.1.Final/ 

Windows

On Windows, make a copy of c:\opt\jboss-as-7.1.1.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\jboss-as-7.1.1.Final\ 

Delete i2b2.war.deployed file

Linux Example
$ rm /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war.deployed

Extract / copy the files from the upgrade zip file to your JBoss deployments directory

Contents of Zip File

i2b2 Upgrade Instructions for 1.7.05+ to 1.7.09c.pdf

configuration/
configuration/crcapp/
configuration/crcapp/crc.properties-1709

deployments/
deployments/i2b2.war.dodeploy
deployments/i2b2.war/
deployments/i2b2.war/WEB-INF/
deployments/i2b2.war/WEB-INF/lib/
deployments/i2b2.war/WEB-INF/lib/CRC-core.jar
deployments/i2b2.war/WEB-INF/lib/FR-core.jar
deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar
deployments/i2b2.war/WEB-INF/lib/IM-core.jar
deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar
deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar
deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar
deployments/i2b2.war/WEB-INF/services/
deployments/i2b2.war/WEB-INF/services/CRC.aar
deployments/i2b2.war/WEB-INF/services/FR.aar
deployments/i2b2.war/WEB-INF/services/IM.aar
deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
deployments/i2b2.war/WEB-INF/services/Ontology.aar
deployments/i2b2.war/WEB-INF/services/Workplace.aar

admin/

Copy the deployments directory into your existing JBoss standalone directory, replacing any existing files when prompted.

Linux Example
$ cp -r deployments /opt/jboss-as-7.1.1.Final/standalone

Modify the crc.properties

Copy the contents of the crc.properties-1709 file into the crc.properties file.

 

Backup your existing admin directory

Linux Example

/var/www/html/admin

Windows Example

C:\inetpub\wwwroot\admin

Extract / Copy the admin directory from the update zip file to your web server directory

To prevent the loss of your current data configuration settings verify you can access the i2b2_config_data.js file in the backup copy of the admin directory you created in the previous step.

Copy your old i2b2_config_data.js file into the updated admin directory on your web server. Overwrite the existing file if prompted.

Start JBoss

Linux Example
$ /opt/jboss-as-7.1.1.Final/bin/standalone.sh -b 0.0.0.0 &

Verify your upgrade

Test Web Client

Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)

 

 


 

Step-by-Step Instructions for WildFly

  1. Stop WidlFly

    Linux Example
    $ /opt/wildfly-10.0.0.Final/bin/jboss-cli.sh --connect command=:shutdown
  2. Backup your existing i2b2.war directory

    On Linux, make a copy of /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/jboss-as-7.1.1.Final/
    On Windows, make a copy of c:\opt\wildfly-10.0.0.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\jboss-as-7.1.1.Final\ 
  3. Delete i2b2.war.deployed file

    Linux Example
    $ rm /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war.deployed
  4. Extract / copy the files from the upgrade zip file to your WildFly deployments directory

    The upgrade zip file contains the following files: i2b2 Upgrade Instructions for 1.7.05+ to 1.7.09c.pdf deployments/ deployments/i2b2.war.dodeploy deployments/i2b2.war/ deployments/i2b2.war/WEB-INF/
    deployments/i2b2.war/WEB-INF/lib/
    deployments/i2b2.war/WEB-INF/lib/CRC-core.jar
    deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar
    deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar
    deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar
    deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar
    deployments/i2b2.war/WEB-INF/lib/FR-core.jar
    deployments/i2b2.war/WEB-INF/lib/IM-core.jar
    deployments/i2b2.war/WEB-INF/services/
    deployments/i2b2.war/WEB-INF/services/CRC.aar
    deployments/i2b2.war/WEB-INF/services/IM.aar
    deployments/i2b2.war/WEB-INF/services/FR.aar
    deployments/i2b2.war/WEB-INF/services/Ontology.aar
    deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
    deployments/i2b2.war/WEB-INF/services/Workplace.aar
  5. Start WildFly

    Linux Example
    $ /opt/wildfly-10.0.0.Final/bin/standalone.sh -b 0.0.0.0 &
  6. Verify your upgrade

Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)

 

 

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