Page History
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Data Model and Query Tool: Jeff (40 45 minutes) + QA 10
- Intro to i2b2
- Query Tool
- Ontologies
- Data Model
- Community Project Highlights (ACT, genomics, etc. Medco?) - i2b2 on OMOP / OMOP to i2b2
- Exercise 1: Building a query (demo data) [15 minutes]
- Ontology Browser
- Find Terms
- Counts Query
- Breakdown
- Exercise 2: Building a temporal query (demo data) [10 minutes]
- Exercise 3: Export some data (export XLS or Nich’s pt set plugin) [10 minutes]
Installation and Shrine: Mike (40 45 minutes) + QA 10 mins
- Methods of installation
- Synthea on ACT Ontology with COVID19
- SHRINE 3 node with HUB Instal
- Exercise 4
- FAQ
ETL BREAK (15 minutes)
Q and A (15 minutes)
ETL pipeline for i2b2: Kavi (40 minutes) + QA 10 mins
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