Page History
Overview of CRC Data Installation
The crcdata tables are part of the Data Repository (CRC) Cell. The following outlines the steps that will be taken during the crcdata installation.
Step 1: Change your working directory
Step 2: Set the database properties for the crcdata
Step 3: Create the crcdata tables, indexes and sequences
Step 4: Create the stored procedures
Step 5: Load sample data into the tables
Step 6: Create the OMOP views
Step 1: Change Working Directory
Anchor | ||||
---|---|---|---|---|
|
During the CRC Data Installation we will be working with the crcdata directory. Within this directory are the files we will be editing to define the database properties, create the crcdata tables and load the sample data provided with the i2b2 on OMOP data package.
To change your working directory to the crcdata directory enter the following command:
Panel | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||
|
Excerpt | ||
---|---|---|
|
EXAMPLES:
indent | ||
---|---|---|
| ||
Windows Command: CD C:\opt\data\i2b2_omop_data\oracle\CRCdata |
indent | ||
---|---|---|
| ||
Linux Command: CD /opt/data/i2b2_omop_data/oracle/CRCdata |
Step 2: Set the database properties for the crcdata tables
Anchor | ||||
---|---|---|---|---|
|
Excerpt | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
As stated earlier each i2b2 database schema has a corresponding directory that contains the data files for installing the data. Each of these directories has a file called db.properties and it needs to be updated with your environment variables. Steps for setting database propertiesAssumptions:
Instructions:1. At the command prompt type the following:
2. The db.properties file will open. Set the following properties for the DBMS at your site:
|
html-text |
---|
<div class="i2b2-panel"> <table class="i2b2-important"> <colgroup> <col width="24"> <col> </colgroup> <tbody> <tr> <td> <img src="https://community.i2b2.org/wiki/download/attachments/14091764/icon_important.png" width="16" height="16" align="absmiddle" alt="info" border="0"> </td> <td> <b>Note<<b>Important</b> <br>For the purpose of this document, when you set the database properties make sure you set the user to <b>i2b2demodata</b> and the project to <b>demo</b>. </td> </tr> </tbody> </table> </div> |
Panel | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||
Oracle Database | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
indent | ||||||||||
| ||||||||||
| ||||||||||
| ||||||||||
| ||||||||||
| ||||||||||
| ||||||||||
|
Level | 1 |
---|
3. Save the changes and close the file.
html-text |
---|
<div class="i2b2-panel"> <table class="i2b2-tip"> <colgroup> <col width="24"> <col> </colgroup> <tbody> <tr> <td> <img src="https://community.i2b2.org/wiki/download/attachments/14091764/icon_tip.png" width="16" height="16" align="absmiddle" alt="info" border="0"> </td> <td> <b>Tip</b> <br>To save yourself steps, DO NOT close your Command Prompt window as you will be continuing to use it throughout the remainder of the installation. </td> </tr> </tbody> </table> </div> |
Tip | ||
---|---|---|
| ||
To save yourself steps, DO NOT close your Command Prompt window as you will be continuing to use it throughout the remainder of the installation. |
Step 3: Create the crcdata tables, indexes and sequences
Anchor | ||||
---|---|---|---|---|
|
Step 4: Create the stored procedures
Anchor | ||||
---|---|---|---|---|
|
Step 5: Load sample data into the tables
Anchor | ||||
---|---|---|---|---|
|
Step 6: Create the OMOP views
Anchor | ||||
---|---|---|---|---|
|