OMOP
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Comment: Migration of unmigrated content due to installation of a new plugin

 

Assumptions

 

Order of Installation

 

Extract the i2b2 Data Package

 

Directory Structure and Schema Mapping

 

  • The data in this package is based on the CMS SynPUF 1K data set provided by OMOP.
  • The project for this installation will be called omop.
  • The PM Cell and hive are already installed.

html-text
<div class="i2b2-panel">
    <table class="i2b2-note">
        <colgroup>
            <col width="24">
            <col>
        </colgroup>
        <tbody>
            <tr>
                <td>
                    <img src="https://community.i2b2.org/wiki/download/attachments/14091764/icon_note.png" width="16" height="16" align="absmiddle" alt="info" border="0">
                </td>
                <td>
                    <b>Note</b>
                    <br><br>You will need to know the domain that was defined during the PM Cell installation.
                </td>
            </tr>
        </tbody>
    </table>
</div>

Order of Installation

It is important the tables, procedures, and views are installed in the order defined below. Failure to do so will result in errors when running the scripts.

CRC Tables

Image Added   crcdata: create tables

Image Added   crcdata: create stored procedures

Image Added   crcdata: load data

Image Added   crcdata: create OMOP views

Ontology Tables

Image Added   metadata: create tables

Image Added   metadata: load data

Workplace Tables

Image Added   workdata: create tables

Image Added   workdata: load data