IDRT - Integrated Data Repository Toolkit
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When you first start the IMT, you will see a window similar to the screendump screen dump below. Most windows within the IMT don't contain entries. IMT is an Eclipse-based application, so we will stick to their terminology, calling these windows "views".

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If you click on a staging server, the IMT will show all i2b2 projects that the database account can read. i2b2 projects correspond to at least one database or schema and start with a leading string "I2B2".

Reference

Menu File

Exiting Exits the program.

Menu Server

Info

A Staging Server is an i2b2-Database-Server , that is used to upload data to.
A Datasource Server is any Database-Server , that is used to extract data from.

Name

Description

Add Staging I2B2Server...

Creates a new Staging Server.

Edit Staging I2B2Server...

Edits the selected Staging Server.

Delete Staging I2B2Server

Deletes the selected Staging Server.

New Datasource Server...

Creates a new Datasource Server.

Edit Datasource Server...

Edits the selected Datasource Server.

Delete Datasource Server

Deletes the selected Datasource Server.

Import Staging I2B2Server...

Lets Let's you import a previously exported Staging Server.

Export Staging I2B2Server...

Lets Let's you export the selected Staging Server.

Info

It's a good idea to backup

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staging servers regularly. Additionally, export/import is useful for copying the configuration to another instance of the IMT.

Menu Options

Name

Description

Default

Target Folder Name:

The root i2b2 folder name where your data get imported to.

Patientdata

PIDGen URL

The URL where your TMF PID generator is running (rarely used).

 

Export Log Location

The location where the log is stored after exporting it, e.g. /home/idrt/IDRTworkspace/logs/export.log

 

Syso Log

Activates extended logging

Unchecked

Syso Log Location

The location where the sys log is stored.

 

Filter Projects

Filters i2b2 projects to exclude e.g. i2b2pm, i2b2hive, etc

Checked

Hide Temporary/Secondary Tables

Only for Oracle: hides temporary/secondary tables.

Unchecked

Show Total Number of Patients

Shows the c_totalnum in the Mapping Editor

Checked

Guess-Rows

The number of rows the CSV importer should check to guess the datatypes of the columns.

50

   
Note

In some cases, specifying a Syso Log Location results in an empty and non-respnding responding import browser view after restart. Closing the import browser view and reopening the view in the view menu solves the problem.

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