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Each cell must communicate with other cells. To facilitate this, you must set the cell URL properties for allow each cell to accurately reflect know the URL of the other cells.
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| title | Important |
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Generally these do not need to be configured, because the hostname and port are automatically determined by the server and the rest of the URL is required to remain as
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written
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When you edit the queryprocessor.ws.ontology.url and edu.harvard.i2b2.crc.delegate.ontology.url properties with the location of your Ontology Cell it is extremely important that you only edit the hostname (localhost) and the port (9090). The remainder of the URL is required as it is written and should not be changed. |
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When you edit the ontology.ws.pm.url property with the location of your PM Cell it is extremely important that you only edit the hostname (localhost) and the port (9090). The remainder of the URL is required as it is written and should not be changed. |
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| title | Important |
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. If you do want to manually specify the hostname and port, change the data type to a T and append this to the text value. (Data type U is automatically resolved into a URL.)
For example,
| datatype_cd | param_name_cd | value |
| U | edu.harvard.i2b2. |
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| crc. |
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| delegate. |
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| title | Important |
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| ontology.url | /services/OntologyService |
could become
| datatype_cd | param_name_cd | value |
| T | edu.harvard.i2b2. |
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| crc. |
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| delegate. |
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| title | Important |
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| ontology.url | http://localhost:9090/services/OntologyService |
| Note | ||
|---|---|---|
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When you edit the workplace.ws.pm.a .url property with the location of your PM Cell a cell it is extremely important that you only add/edit the hostname (localhost) and the port (9090). The remainder of the URL is required as it is written and should not be changed. |
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Value | Description |
|---|---|
true | A backslash will be added automatically to the metadata fullpath name if it does not already exist. |
false | This setting will not add a backslash to the fullpath name and will provide true backward compatibility with release 1.3 |
Appendix: All parameters
Below is a table of all configurable cell parameters and their default values. Data Type is T for text values, and U for URL values. URL values will automatically have protocol://hostname:port/ appended to the value, which is detected by the server. (For example, http://localhost:9090/)
| Data Type | Parameter | Value |
| T | queryprocessor.jndi.queryinfolocal | ejb.querytool.QueryInfoLocal |
| T | queryprocessor.jndi.querymanagerlocal | ejb.querytool.QueryManagerLocal |
| T | queryprocessor.jndi.querymanagerremote | ejb.querytool.QueryManager |
| T | applicationName | Ontology Cell |
| T | applicationName | CRC Cell |
| T | applicationVersion | 1.7 |
| T | applicationVersion | 1.7 |
| T | edu.harvard.i2b2.crc.analysis.queue.large.jobcheck.timemills | 60000 |
| T | edu.harvard.i2b2.crc.analysis.queue.large.maxjobcount | 1 |
| T | edu.harvard.i2b2.crc.analysis.queue.large.timeoutmills | 43200000 |
| T | edu.harvard.i2b2.crc.analysis.queue.medium.jobcheck.timemills | 60000 |
| T | edu.harvard.i2b2.crc.analysis.queue.medium.maxjobcount | 4 |
| T | edu.harvard.i2b2.crc.analysis.queue.medium.timeoutmills | 3000 |
| T | edu.harvard.i2b2.crc.delegate.ontology.operation.getchildren | /getChildren |
| T | edu.harvard.i2b2.crc.delegate.ontology.operation.getmodifierinfo | /getModifierInfo |
| T | edu.harvard.i2b2.crc.delegate.ontology.operation.getterminfo | /getTermInfo |
| U | edu.harvard.i2b2.crc.delegate.ontology.url | /services/OntologyService |
| T | edu.harvard.i2b2.crc.i2b2SocketServer | 7070 |
| T | edu.harvard.i2b2.crc.jms.large.timeoutsec | 43200 |
| T | edu.harvard.i2b2.crc.jms.medium.timeoutsec | 14400 |
| T | edu.harvard.i2b2.crc.jms.small.timeoutsec | 180 |
| T | edu.harvard.i2b2.crc.lockout.setfinderquery.count | 7 |
| T | edu.harvard.i2b2.crc.lockout.setfinderquery.day | 30 |
| T | edu.harvard.i2b2.crc.lockout.setfinderquery.zero.count | -1 |
| T | edu.harvard.i2b2.crc.pdo.paging.inputlist.minpercent | 20 |
| T | edu.harvard.i2b2.crc.pdo.paging.inputlist.minsize | 1 |
| T | edu.harvard.i2b2.crc.pdo.paging.iteration | 100 |
| T | edu.harvard.i2b2.crc.pdo.paging.method | SUBDIVIDE_INPUT_METHOD |
| T | edu.harvard.i2b2.crc.pdo.paging.observation.size | 7500 |
| T | edu.harvard.i2b2.crc.pdo.request.timeoutmills | 600000 |
| T | edu.harvard.i2b2.crc.pm.serviceaccount.password | demouser |
| T | edu.harvard.i2b2.crc.pm.serviceaccount.user | AGG_SERVICE_ACCOUNT |
| T | edu.harvard.i2b2.crc.setfinder.querygenerator.version | 1.7 |
| T | edu.harvard.i2b2.crc.setfinderquery.obfuscation.breakdowncount.sigma | 1.6 |
| T | edu.harvard.i2b2.crc.setfinderquery.obfuscation.count.sigma | 1.323 |
| T | edu.harvard.i2b2.crc.setfinderquery.obfuscation.minimum.value | 3 |
| T | edu.harvard.i2b2.crc.setfinderquery.skiptemptable.maxconcept | 40 |
| U | edu.harvard.i2b2.ontology.ws.crc.url | /services/QueryToolService |
| T | edu.harvard.i2b2.ontology.ws.fr.attachmentname | cid |
| T | edu.harvard.i2b2.ontology.ws.fr.filethreshold | 4000 |
| T | edu.harvard.i2b2.ontology.ws.fr.operation | urn:recvfileRequest |
| T | edu.harvard.i2b2.ontology.ws.fr.tempspace | /tmp |
| T | edu.harvard.i2b2.ontology.ws.fr.timeout | 10000 |
| U | edu.harvard.i2b2.ontology.ws.fr.url | /services/FRService/ |
| T | I2B2_MESSAGE_ERROR_AUTHENTICATION_FAILURE | Authentication failure. |
| T | I2B2_MESSAGE_ERROR_INVALID_MESSAGE | Invalid message body |
| T | I2B2_MESSAGE_STATUS_COMPLETED | COMPLETED |
| T | I2B2_MESSAGE_STATUS_ERROR | ERROR |
| T | I2B2_MESSAGE_STATUS_FINISHED | FINISHED |
| T | I2B2_MESSAGE_STATUS_INCOMPLE | INCOMPLETE |
| T | I2B2_MESSAGE_STATUS_PROCESSING | PROCESSING |
| T | I2B2_MESSAGE_STATUS_QUEUED | QUEUED |
| T | ontology.terminal.delimiter | true |
| U | ontology.ws.pm.url | /services/PMService/getServices |
| T | queryprocessor.jndi.pdoquerylocal | ejb.querytool.PdoQueryLocal |
| T | queryprocessor.jndi.queryexecutormdblocal | ejb.querytool.QueryExecutorMDBLocal |
| T | queryprocessor.jndi.queryexecutormdbremote | ejb.querytool.QueryExecutorMDB |
| T | queryprocessor.jndi.querymasterlocal | ejb.querytool.QueryMasterLocal |
| T | queryprocessor.jndi.queryresultlocal | ejb.querytool.QueryResultLocal |
| T | queryprocessor.jndi.queryrunlocal | ejb.querytool.QueryRunLocal |
| T | queryprocessor.jndi.queue.connectionfactory | ConnectionFactory |
| T | queryprocessor.jndi.queue.executor_queue | queue/jms.querytool.QueryExecutor |
| T | queryprocessor.jndi.queue.response_queue | queue/jms.querytool.QueryResponse |
| T | queryprocessor.multifacttable | false |
| U | queryprocessor.ws.ontology.url | /services/OntologyService/getTermInfo |
| U | queryprocessor.ws.pm.url | /services/PMService/getServices |
| U | workplace.ws.pm.url | /services/PMService/getServices |
| U | im.ws.pm.url | /services/PMService/getServices |
| T | im.checkPatientInProject | true |
| T | im.empi.service | none |
