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a way of coding "concepts" in clinical research informatics; various terminology standards define coding schemes; for instance, the Common Procedural Terminology (CPT) standard uses the CPT-4 coding scheme, which assigns a 5-digit number to each "procedure" in its taxonomy (e.g., CPT4:42810)
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Current Procedural Terminology; Level 1 of HCPCS coding standard for healthcare procedures; authored by AMA
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CRI
Clinical Research Informatics; the realm of healthcare research where i2b2 is employed
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Clinical and Translational Science Award from the NCATS at NIH (ncats.nih.gov/research/research-activities/ctsa); healthcare research institutions that receive the CTSA grant are prime candidates for inclusion in the ENACT Network
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US Department of Health and Human Services (Federal) (hhs.gov); also HHS
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ENACT
Evolve to Next-gen ACT; NCATS-funded consortium of CTSA hubs that incorporates SHRINE instances across the USA; successor to the ACT Network
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ETL
extract, transform, and load (database conversion); the primary ETL for i2b2 is in the conversion of EHR/EMR to the CRC database (CDM)
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FDA
US Food and Drug Administration (fda.gov); author of NDC
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FHIR
Fast Healthcare Interoperability Resources (fhir.org), an interoperability standard from HL7 (say “fire”)
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Healthcare Common Procedure Coding System; authored by AMA (say "hick-picks")
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US Dept. of Health and Human Services (hhs.gov)
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HL7
Health Level Seven International, an ANSI-accredited standards-developing non-profit organization, since 1987 (www.hl7.org); author of FHIR, and coding standards for Administrative and Clinical concepts
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Informatics for Integrating Biology and the Bedside (i2b2i2b2transmart.org)
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The i2b2/tranSMART common data model is the primary patient data model used in i2b2 and tranSMART. It consists of a "star schema": one table for the multitude of patient-related observations, supported by "dimension" tables for patient demographics, encounter records, provider information, etc.
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International Classification of Diseases; coding standards for diagnoses and procedures; authored by WHO and NCHS
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IHTSDO
International Health Terminology Standards Development Organisation (snomed.org); see SNOMED International
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IIS
web server software for hosting the i2b2 webclient (user interface) on Windows; may be deployed on the same host as the Wildfly server
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a copy of the i2b2 core software that is packaged for use in a Docker container
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IRB
Institutional Review Board; approval by an IRB is required anytime human subjects are part of the research at an institution
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JBoss
former name of the Wildfly server software (say "jay-boss")
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Java Development Kit; a version of Java that includes the Java compiler and support libraries; required for i2b2; not the same as the JRE
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JRE
Java Runtime Environment; a version of Java that does not include the Java compiler nor related support libraries; not used in i2b2
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LDS
see limited data set
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PHI which excludes direct identifiers of the patient, their family, employer, etc. May include city, state, ZIP code, general geographic infoinformation, date of birth (DOB), date of death (DOD), age in years, months, days, or hours. Still protected under HIPAA. This is NOT the same as de-identified data; some could say it is only "partially" de-identified. It may NOT include name, address, phone, email, Social Security Number (SSN), Medical Record Number (MRN), insurance ID, account #’s, license #’s, vehicle IDsID's, device IDs, URLsID's, URL's, IP addresses, biometric IDsID's, photos, etc.
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Logical Observation Identifiers Names and Codes (say "loink"); coding standard for healthcare measurements, such as laboratory test values and vital signs; authored by the Regenstrief Institute
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NCATS
US National Center for Advancing Translational Sciences, part of the NIH (say "en-cats")
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