Developers Getting Started With i2b2
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Cell IDParameter NameExample ValueNotes
CRCedu.harvard.i2b2.crc.exportcsv.datamanageremailuserid@partners.orgEmail address used for sending request/export e-mails
CRCedu.harvard.i2b2.crc.smtp.hostsmtp.partners.orgSMTP host
CRCedu.harvard.i2b2.crc.smtp.port25SMTP port
CRCedu.harvard.i2b2.crc.smtp.ssl.enabledFALSETRUE will enable SSL
CRCedu.harvard.i2b2.crc.smtp.authFALSETRUE will enable SMTP authentication
CRCedu.harvard.i2b2.crc.smtp.usernamenoneSMTP username (required for SMTP authentication)
CRCedu.harvard.i2b2.crc.smtp.passwordnoneSMTP password (required for SMTP authentication)
CRCedu.harvard.i2b2.crc.smtp.enabledFALSETRUE will enable e-mails
CRCedu.harvard.i2b2.crc.smtp.from.fullnameData ManagerName that e-mails will be sent from.
CRCedu.harvard.i2b2.crc.smtp.from.emaildatamanager@site.orgE-mail address that e-mails will be sent from.
CCedu.harvard.i2b2.crc.smtp.subjecti2b2 Data RequestSubject line for e-mails.
CRCedu.harvard.i2b2.crc.exportcsv.defaultescapecharacter"Escape character for export files
CRCedu.harvard.i2b2.crc.exportcsv.maxfetchrows-1Maximum number of rows to export, or -1 for no limit
CRCedu.harvard.i2b2.crc.exportcsv.defaultlineend\nLine ending for export files
CRCedu.harvard.i2b2.crc.exportcsv.defaultseperator\tField separator for export files
CRCedu.harvard.i2b2.crc.exportcsv.resultfetchsize50000Number of records retrieved during each database fetch.
CRCedu.harvard.i2b2.crc.exportcsv.filename{{{PROJECT_ID}}}/{{{DATE_yyyyMMdd}}}_{{{FULL_NAME}}}.tsvParameterized template for export file names. If the extension is .zip, the file is zipped.
CRCedu.harvard.i2b2.crc.exportcsv.defaultquotechar"Quote character for export files
CRCedu.harvard.i2b2.crc.exportcsv.workfolder/tmp/i2b2Folder on the i2b2 server for data exports
CRCedu.harvard.i2b2.crc.exportcsv.zipencryptmethodnoneEncryption method for the exported ZIP file. One of STANDARD, NONE, or AES.

Request and Export Results:

Metadata about data request and export queries are stored in the QT_XML_RESULT table, in the XML_VALUE field:

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Software Changes:

  • Data: New entries in HIVE_CELL_PARAMS, QT_QUERY_RESULT_TYPE, and QT_BREAKDOWN_PATH define the exporter configuration.
  • Java code: New breakdown classes and updates to existing java classes to support the data exporter functionality.

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Developers Getting Started With i2b2 getstarted