Developers Getting Started With i2b2
Space shortcuts
Space Tools
Developers Getting Started With i2b2 getstarted

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

View Data Request Details


Generate data file 


The data export runs in the background and the file is generated in a specified folder 

...

Sample Letter generated for Data Manager

Results of the i2b2 request entitled - "Demographics_12_48_52", submitted on Apr 18, 2024 1:47:58 PM, are available.

Important notes about your data:
- Total number of patients returned in your data request: 133
- i2b2 reviewer:

Only persons specifically authorized and selected (as listed at the top of this letter) can download these files. If additional user access is needed, please ensure the person is listed on your project IRB protocol and contact the i2b2 team.

Specifically:
- Remove all PHI from computer, laptop, or mobile device after analysis is completed.
- Do NOT share PHI or PII with anyone who is not listed on the IRB protocol.

Your guideline for the storage of Protected Health Information can be found at: https://www.site.com/guidelines_for_protecting_and_storing_phi.pdf

*To download these files*
- You must be logged onto your site

These results are the data that was requested under the authority of the Institutional Review Board.  The query resulting in this identified patient data is included at the end of this letter.  A copy of this letter is kept on file and is available to the IRB in the event of an audit.

Thank you,

The i2b2 Team 


Example Export files (all data are fake)

User-created Demographics


User-created Diagnosis


Data Export Configuration

...

The i2b2 breakdown architecture has been modified to support new breakdown types for data request and export. HIVE_CELL_PARAMS has new parameters for global configuration, the QT_RESULT_TYPE table has new entries for query export types, and the QT_BREAKDOWN_PATH defines the request and export. These are XML documents containing e-mails to send and SQL to execute. These breakdown types display in the run query dialog. User e-mails are sent to the e-mail address of the currently logged-in use. Data Manager e-mails are sent to an address configured in HIVE_CELL_PARAMS, and the data manager e-mail in an export is also saved as a file in the export location. The export file generation location, also configured in HIVE_CELL_PARAMS, is on the local drive hosting the i2b2 application. 

Database changes

Currently QT_BREAKDOWN_PATH .value column has datatype of varchar(2000). In order to support the XML  structure needed for the Data Exporter, the value column has been modified to CLOB datatype (ORACLE) and varchar(max) for (SQLServer). Image Removedthe 




Configuring Database Parameters

...

Developers Getting Started With i2b2 getstarted