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This is the home of the Related Project - NLP cTAKES Project space.
News: cTAKES is now a Top Level project on Apache Software Foundation= !
There is a wealth of information within the plain text clinical narrativ= e. The purpose of this cell is to harness the unstructured informatio= n by allowing i2b2 users to query and join that information with existing i= 2b2 concepts. Currently, the entire note is commonly stored as a sing= le row in the observation_blob field in the observation_fact table in i2b2.= One of NLP cTAKES' features is its capability to 'read' through and = extract concepts from plain text notes and transform them into structured a= nd normalized information. The purpose of this cell is to incorporate= cTAKES and i2b2 by formatting the output of cTAKES into the i2b2 observati= on_fact table format (facts, concepts, modifiers, and values) which can the= n be easily queried by existing i2b2 interfaces.
There will be 2 main components:
Quick Start Guide:
In addition to deploying the cTAKES GUI as a war file to a managed = servlet container such as JBoss or Tomcat, cTAKES provides a standalone web= server version running Jetty out of the box.
*Design and Archite=
cture
*Instal=
lation Guide
Pei J Chen
Children's Hospital Boston
E-mail: <=
span style=3D"color: rgb(51,102,255);">chenpei[at]apache.org
Guergana K Savova, PhD
Children's Hospital Boston E-mail: guergana.savova[at]child=
rens.harvard.edu
Jonathan Bickel, MD
Children's Hospital Boston
=
E-mail: jonathan.bickel[at]children=
s.harvard.edu