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i2b2 Development Tracking System (JIRA)
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The i2b2 Workbench project within the i2b2 Development Tracki=
ng System (JIRA) uses Agile methodologies. This means there are =
now three new types of issues in the Change Summary section that may be new=
to members of the i2b2 Community in regards to the i2b2 Software. These is=
sues are:
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Epic | =20
Used to capture a large body of work. Can be bro=
ken down into smaller stories. | =20
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Story | =20
A "user" story told in non-technical terms. | =20
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Sub-Task | =20
An individual unit of work contained within a st=
ory. | =20
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i2b2 Workbench Release 2.0.01
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Release Date: October 17, 2017
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2.0.01 Release Summary
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The current version of the i2b2 Workbench software that has been releas=
ed is 2.0.01. This release includes some improvements and fixes many issues=
, the most significant one being a problem with the i2b2 Workbench not runn=
ing on newer apple machines. Since the problem is with a third-party softwa=
re and out of the hands of the i2b2 community we have decided to create two=
new virtual machines (VM) that mac users can download and use in their env=
ironment.
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- The first VM (i2b2WB-VM-lin-mac-2001) contains the i2b2 Workbench appli=
cation and can be used by i2b2 users who want to run the i2b2 Workbench in =
Linux machine VM on a mac (or any other machine with VirtualBox).
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- The second VM (i2b2WB-VM-lin-src-2001) contains the source code for the=
i2b2 Workbench, Eclipse Neon, and the i2b2 Workbench application. It can b=
e used by developers who want to access & run the source code in a Linu=
x environment.
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Some other improvements include updating the i2b2 Workbench to run on a=
newer version of Eclipse (Neon) and using JAR files to add new plugins to =
your i2b2 Workbench. Several improvements were also made to the Timeline vi=
ew and are included in this release.
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- Improvements to the pop-ups that display when hovering over a tic in th=
e timeline view. Can see a traversal list of all observations and the abili=
ty to click on an observation to see the details.
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- New 'already-read' and 'starring' markings to indicate which observatio=
ns have been read or starred by you.
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- Advanced text searches are improved in Note viewer
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Installation Notes
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- This release note applies to you if you are upgrading to 2.0.01=
from an earlier version of i2b2 Workbench.
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- If you are installing 2.0.01 onto a computer that is running an earlie=
r version of the i2b2 Workbench, please make sure the workbench and all Ecl=
ipse applications are closed prior to installing this release.
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- If you are installing a new instance of i2b2 we recommend you refer to=
the installation documentation found on t=
he i2b2 commun=
ity wiki. This documentation will guide you through the entire installa=
tion process. Chapter 8. i2b2 Workbe=
nch Install contains the information that is pertinent to the i2b2 work=
bench releases.
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Upgrade Notes
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The changes included in this release do not require any changes made to =
other i2b2 software components like the i2b2 server or database scripts.
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Third Party Software Changes
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The two main upgrades with version 2.0.01 of the i2b2 Workbench is upgr=
ading the code to work on a newer version version of Eclipse and introducin=
g virtual machines (VMs) containing the i2b2 Workbench application and sour=
ce code. These VMs were built on Unix using VirtualBox.
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- Eclipse Neon 4.6
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- VirtualBox
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Change Summary - Release 2.0.01
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Bug Fixes
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- [WORKBENCH-14] - Drag / Drop not wor=
king in the Mac version of the i2b2 Workbench
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- [WORKBENCH-34] - Buttons in the List=
Items window of the timeline do not display correctly
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Epic
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- [WORKBENCH-17] - Updating the i2b2 W=
orkbench to work with gitHub, newer Eclipse, and plugins
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- [WORKBENCH-19] - Release 1.7.09c pro=
ject
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Story
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- [WORKBENCH-8] - Workbench: Upgrade to l=
atest version of Eclipse
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- [WORKBENCH-20] - Create a VM of the =
i2b2 Workbench for Mac / Linux users
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- [WORKBENCH-30] - Final VM Build Task=
s
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- [WORKBENCH-39] - Timeline improvemen=
ts
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Sub-Task
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- [WORKBENCH-13] - Remove features and=
add Plugin capabilities to the Workbench Application
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- [WORKBENCH-21] - Documentation: Deve=
loper's guide on installing the VM with i2b2 Workbench
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- [WORKBENCH-22] - Disconnect plugins =
from repository
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- [WORKBENCH-23] - Workbench applicati=
on will not launch for i2b2user
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- [WORKBENCH-24] - Plugins in Eclipse =
do not display for i2b2User
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- [WORKBENCH-25] - Clean the database =
(qt tables) before the final packaging of the VM
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- [WORKBENCH-26] - i2b2 icon doesn't a=
ppear in correctly in VM toolbar
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- [WORKBENCH-28] - Setup views to disp=
lay in the standard layout for the i2b2 Workbench
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- [WORKBENCH-29] - Temporal Query view=
hangs
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- [WORKBENCH-31] - Remove shared folde=
r path from final build
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- [WORKBENCH-32] - Update version numb=
er on splash screen and plugins
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- [WORKBENCH-33] - Remove Eclipse view=
s from the list of i2b2 Views
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- [WORKBENCH-36] - Remove features plu=
gin from Workbench repository
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- [WORKBENCH-38] - Clean up platform s=
pecific config files
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- [WORKBENCH-40] - Timeline now suppor=
ts two levels of popups
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- [WORKBENCH-41] - New feature to flag=
observations
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- [WORKBENCH-42] - Note Viewer Improve=
ments
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- [WORKBENCH-43] - Added "Scroll to zo=
om"
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- [WORKBENCH-44] - Improved look and f=
eel
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- [WORKBENCH-45] - Modernized color sc=
heme
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