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AUG2016_Castro.pdf
significance, whether or not someone or a population has a given condition. History Types of computable phenotypes: • Rules-based (eMERGE) • Machine learning We have … Schizophrenia (SCZ) 0.2% 0.16 Type-I Diabetes Mellitus (T1DM) 0.9% 0.16 Type-II Diabetes Mellitus (T2DM) 10.6% - Ulcerative Colitis (UC) 2.5% 0.48 PhenotypeAUG_2012_Ont.ppt
services Pull data from NCBO via REST services. Reorganize information into i2b2 Metadata format METADATA COLUMN DATA TYPE (ORACLE) DATA TYPE (SQL) C_HLEVEL … TABULAR LIST of DISEASES and INJURIES</label> <type>class</type> <relations> <entry> <string>ChildCount</stringwebclient-270819-2017-2236.pdf
of values. In i2b2, there are several types of constraints that can be defined in the Query Tool view. Group Constraints Date Constraint 12 a. i. ii … . Then type the date directly in the text box or click on the drop-down arrow to open the calendar below to select a date. This will set the date range for allAMIA_Spring_2011_1.pdf
Accession Name NM_005228 Type mrna (NCBI) Accession Name NP_005219 Type protein (NCBI) Accession Name NT_004487 Type contig (NCBI) Ch L tiromosome ocai2b2 Common Data Model v0_9.pdf
for diagnoses, medications, and other data types, all patient observations are stored in a single “fact” table. A separate ontology describes … code sets. Furthermore, institutions can easily add new types of data to i2b2 and tranSMART just by extending the ontology20080130_Arch_VCDE_F2F_Day3_Terminology_Metadata.ppt
, phenotype… Model – Core Identification & Description type (0..1) Nature of content relative to the category. application – describes domain in an application … generic types of tasks or activities (e.g. selling, selecting) upperLevel – describes general, domain independent concepts (e.g. space, time) structure (1) IndicatesAppendix B - Install Checklist.pdf
information for your type of database. • The address in the URL needs to point to either the location of your hivedata tables (BootstratpDS) or the tables for your cell (DemoDS). 5. The <driver-class> and <driver> for each <datasource> needs to be defined correctly for the type of database you are connectingWebClient_WorkList_09-24-2010.xls
ID Category Issue Description Comments Issue Type Priority Effort Added Comments Owner 4 Find Terms View The "Find" button looks like a tab Bug 2 = Medium 1 5 … the existing name (delete it) before entering a new one. In the workbench it is already highlighted. Bug 3 = Low 1 42 Query Tool View The "type of resultsUGM2015_-_Introduction_to_NextGen_Database_Reporting_.pdf
) • Left over candidate fields NOT used as PK TABLE FIELDS SCHEMA TYPE TYPE TEMPLATES template_id NOT NULL, UNIQUE PK TEMPLATES template_name NOT NULL, UNIQUE AK … location_id patient_encounter List of all encounters enc_id patient_documents Generated Docs enc_id KBM Table Types Medical Record (medical_records) • ENCOUNTERI2B2_Webclient_Help_Documentation_7_28_23.pdf
types of constraints that can be defined in the Find Patients view. 1. Group Constraints 1. Date Constraint 16 Setting Date Constraint for the entire Group … date (To) or both. Then type the date directly in the text box or click on the drop-down arrow to open the calendar below to select a date. This will set