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OntoMapper Minutes 7 9 08.doc
of the rule types that were listed in our grant application. (The generation of architypes cannot be built upon previous archetypes however). 2) We talked aboutOntoMapper Minutes 5 13 08.doc
on this. 5) There seems to be 4 types of schema update which will be required by the Ontology Mapper a) Data Discovery UI - the database tables to supporti2b2OMOP_installGuide.pdf
to insert the sample data into the tables db.properties Properties file to define the database setup parameters (type, username, driver, etc.) Schema Mapping … : YOUR_I2B2_OMOP_DATA_DIR is the location where you unzipped the i2b2 omop data package. oracle|sqlserver is the type of database management system used for your CDM database2017-AMIA_i2b2-Update.pps
Health System (SCILHS) i2b2 PCORnet Common Data Model Ontology Currently supports the following data types: Diagnoses Providers Visits Procedures Patient … OMOP CDM fact tables and produce meaningful query results. Query types included Multi-panel, multi-domain queries; Date constrained queries; Occurs > xViewCreator-Installation-Document.doc
and page number as input parameters and outputs a cursor of type as defined in the script (for instance the procedure VISIT_DATA outputs a cursor of typeJune Meeting ETL.pdf
. With ~350M rows, a single table is small enough for good performance. TranSMART - Peter ETL Data Types •Clinical •High-dimensional • mRNA expression • RNAseq … types for all studies Issues •Uses copy of stored procedures •Supporting alternative versions of tranSMART (16.3, 17.1 server) •Requires changes to tranSMARTi2b2 Ontology Tutorial.pdf
i2b2 Ontology Tutorial 21 Using Find Terms Search by Names Tab to Locate Diagnoses Choose 'Ontology' from the drop-down box, type in a text string … -down box, type in a text string ('493' in our example), and click on 'Find'. i2b2 Ontology Tutorial 23 Using Find Terms to Locate Modifier by Name Righti2b2 Ontology Tutorial.doc
" \* MERGEFORMATINET Choose 'Ontology' from the drop-down box, type in a text string ('asthma' in our example), and click on 'Find'. Using Find Terms Search by Codes Tab … " \* MERGEFORMATINET Enter 'ICD-9' from the drop-down box, type in a text string ('493' in our example), and click on 'Find'. Using Find Terms to Locate Modifier by Nameinstall_notes.txt
.js files) and so it doesn't recognize changes -> Type in address of js file ( http://localhost/webclient/js-i2b2/i2b2_loader.js ) and reload (press F5ex6_concepts.csv
type,unit,path,name,code,description largestring,,Labtests\Pulmonary Function Reports\pul,Pulmonary Function Report (largestring),LCS-I2B2:pul,"Pulmonary function tests (PFTs) are noninvasive tests that show how well the lungs are working. The tests measure lung volume, capacity, rates of flow, and gas exchange