[CORE-86] Ontology contains bad XML Created: 07/Jan/14  Updated: 01/Jul/14  Resolved: 06/Jun/14

Status: Closed
Project: i2b2 Core Software
Component/s: Data, Ontology Cell
Affects Version/s: 1.7.00-FRC
Fix Version/s: 1.7.02

Type: Bug Priority: Minor
Reporter: Tom Morris Assignee: Janice Donahoe
Resolution: Fixed Votes: 0
Labels: None
Remaining Estimate: 0d
Time Spent: 1h
Original Estimate: Not Specified

Rank: 0|i000of:
Participant/s:

 Description   
There are a number of terms in the ontology which have malformed XML in their definitions. I discovered this in 1.6.05, but it appears to be unchanged in 1.7.0.

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB60) Smear Morphology\\P-COM\\LOINC:11125-2\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:10</CreationDateTime><TestID>P-COM</TestID><TestName>PLT Comments</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>11125-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+ ENLARGE</Val><Val description="">1+ LARGE</Val><Val description="NEGATIVE">A</Val><Val description="">FEW LARGE</Val><<Val description="">LARGE</Val><Val description="">CAN</Val><Val description="">REF</Val><Val description="">CLUMPS</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UAS-YEAS\\LOINC:32356-8\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:03</CreationDateTime><TestID>UAS-YEAS</TestID><TestName>Yeast</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5822-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">FEW</Val><Val description="">MANY</Val><Val description="">MODERATE</Val><Val description="">NP</Val><Val description="">CAN</Val><Val description="">MOD</Val><Val description="">RARE</Val><Val description="">MARKED</Val><Val description="">NONE</Val><Val description="">ABUND</Val><Val description="">ABUND. BUDDING YEAST</Val><Val description="">FEW BUDDING YEAST<Val description="">FEW-MODERATE</Val><Val description="">MOD.</Val><Val description="">TNTC</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UA-WBC\\LOINC:5799-2\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:22:41</CreationDateTime><TestID>UA-WBC</TestID><TestName>WBC Screen</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5799-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+</Val><Val description="">1-2+</Val><Val description="">2+</Val><Val description="">2++</Val><Val description="">3+</Val><Val description="NEGATIVE">NEG</Val><Val description="NEGATIVE">NEGATIVE</Val><Val description="">NREG</Val><Val description="POSITIVE">POS</Val><Val description="">POSIIVE</Val><Val description="">POSITICE</Val><Val description="">POSITIVE</Val><Val description="">SL TRACE</Val><Val description="">SL.POSITIVE</Val>/EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>
Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UAS-YEAS\\LOINC:21033-6\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:03</CreationDateTime><TestID>UAS-YEAS</TestID><TestName>Yeast</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5822-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">FEW</Val><Val description="">MANY</Val><Val description="">MODERATE</Val><Val description="">NP</Val><Val description="">CAN</Val><Val description="">MOD</Val><Val description="">RARE</Val><Val description="">MARKED</Val><Val description="">NONE</Val><Val description="">ABUND</Val><Val description="">ABUND. BUDDING YEAST</Val><Val description="">FEW BUDDING YEAST<Val description="">FEW-MODERATE</Val><Val description="">MOD.</Val><Val description="">TNTC</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UAS-YEAS\\LOINC:20456-0\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:03</CreationDateTime><TestID>UAS-YEAS</TestID><TestName>Yeast</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5822-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">FEW</Val><Val description="">MANY</Val><Val description="">MODERATE</Val><Val description="">NP</Val><Val description="">CAN</Val><Val description="">MOD</Val><Val description="">RARE</Val><Val description="">MARKED</Val><Val description="">NONE</Val><Val description="">ABUND</Val><Val description="">ABUND. BUDDING YEAST</Val><Val description="">FEW BUDDING YEAST<Val description="">FEW-MODERATE</Val><Val description="">MOD.</Val><Val description="">TNTC</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB60) Smear Morphology\\P-COM\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:10</CreationDateTime><TestID>P-COM</TestID><TestName>PLT Comments</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>11125-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+ ENLARGE</Val><Val description="">1+ LARGE</Val><Val description="NEGATIVE">A</Val><Val description="">FEW LARGE</Val><<Val description="">LARGE</Val><Val description="">CAN</Val><Val description="">REF</Val><Val description="">CLUMPS</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB60) Smear Morphology\\ANISO\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>11/18/2005 14:53:43</CreationDateTime><TestID>ANISO</TestID><TestName>Anisocytosis</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>702-1</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>N</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+</Val><Val description="">2+</Val><Val description="">TRACE</Val><Val description="">+</Val><Val description="">++</Val><Val description="">+++</Val><Val description="">NP</Val><Val description="">TEST NOT PERFORMED</Val><Val description="">3+</Val><Val description="">4+</Val><Val description="">CREDIT</Val><Val description="">NONE</Val><Val description="">0-4 SCHISTO`S OR HELMET CELLS/OIF</Val><Val description="">1+ SICKLE CELLS</Val><Val description="">1+ TARGET, SOME TEARDROP, 1+ POLYCROMASIA</Val><Val description="">ATYPICAL LYMPHS CONFIRMED ON SMEAR</Val><Val description="">CLOT</Val><Val description="">DELETED</Val><Val description="">DONE AT BWH CLIN LABS, BOSTON</Val><Val description="">HOWELL JOLLY BODIES SEEN</Val><Val description="">RBC MORPHOLOGY, RARE TARGET CELLS, 1+ POLYCHROMASIA, 1+ ELIPTOCYTES,1+ OVALOCYTES</Val><Val description="">TEAR DROPS SEEN</Val><Val description="">TEST ENTRY</Val><Val description="">U</Val><Val description="">UNS</Val><Val description="">VERY RARE SCHISTO SEEN ON SCAN AS REQUESTED</Val><Val description="">YELLOW</Val><Val description="">0-1</Val><Val description="">0-1+</Val><Val description="">1-2+</Val><Val description="">2+-3+</Val><Val description="">2-3+</Val><Val description="">3-4+</Val><Val description="NEGATIVE">NEG</Val><Val description="">OCC</Val><Val description="">OCC.</Val><Val description="">OCC-1+</Val><<Val description="">1+ MICROCYTOSIS</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB60) Smear Morphology\\ANISO\\LOINC:38892-6\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>11/18/2005 14:53:43</CreationDateTime><TestID>ANISO</TestID><TestName>Anisocytosis</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>702-1</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>N</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+</Val><Val description="">2+</Val><Val description="">TRACE</Val><Val description="">+</Val><Val description="">++</Val><Val description="">+++</Val><Val description="">NP</Val><Val description="">TEST NOT PERFORMED</Val><Val description="">3+</Val><Val description="">4+</Val><Val description="">CREDIT</Val><Val description="">NONE</Val><Val description="">0-4 SCHISTO`S OR HELMET CELLS/OIF</Val><Val description="">1+ SICKLE CELLS</Val><Val description="">1+ TARGET, SOME TEARDROP, 1+ POLYCROMASIA</Val><Val description="">ATYPICAL LYMPHS CONFIRMED ON SMEAR</Val><Val description="">CLOT</Val><Val description="">DELETED</Val><Val description="">DONE AT BWH CLIN LABS, BOSTON</Val><Val description="">HOWELL JOLLY BODIES SEEN</Val><Val description="">RBC MORPHOLOGY, RARE TARGET CELLS, 1+ POLYCHROMASIA, 1+ ELIPTOCYTES,1+ OVALOCYTES</Val><Val description="">TEAR DROPS SEEN</Val><Val description="">TEST ENTRY</Val><Val description="">U</Val><Val description="">UNS</Val><Val description="">VERY RARE SCHISTO SEEN ON SCAN AS REQUESTED</Val><Val description="">YELLOW</Val><Val description="">0-1</Val><Val description="">0-1+</Val><Val description="">1-2+</Val><Val description="">2+-3+</Val><Val description="">2-3+</Val><Val description="">3-4+</Val><Val description="NEGATIVE">NEG</Val><Val description="">OCC</Val><Val description="">OCC.</Val><Val description="">OCC-1+</Val><<Val description="">1+ MICROCYTOSIS</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB59) Other Hematology\\OFRAG\\LOINC:4667-2\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:10</CreationDateTime><TestID>OFRAG</TestID><TestName>Osmotic Fragility</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>4666-4</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength>0</MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">.00% NACL 100% HEMOLYSIS</Val><Val description="">CURVE INDICATES SPHEROCYTOSIS.</Val><Val description="">CURVE WITHIN NORMAL LIMITS</Val><Val description="">NORMAL</Val><Val description="">NORMAL CURVE.</Val><Val description="">POSITIVE FOR SPHEROCYTOSIS.<Val description="">ABNORMAL</Val><Val description="">CR</Val><Val description="">REF</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB60) Smear Morphology\\ANISO\\LOINC:702-1\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>11/18/2005 14:53:43</CreationDateTime><TestID>ANISO</TestID><TestName>Anisocytosis</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>702-1</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>N</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+</Val><Val description="">2+</Val><Val description="">TRACE</Val><Val description="">+</Val><Val description="">++</Val><Val description="">+++</Val><Val description="">NP</Val><Val description="">TEST NOT PERFORMED</Val><Val description="">3+</Val><Val description="">4+</Val><Val description="">CREDIT</Val><Val description="">NONE</Val><Val description="">0-4 SCHISTO`S OR HELMET CELLS/OIF</Val><Val description="">1+ SICKLE CELLS</Val><Val description="">1+ TARGET, SOME TEARDROP, 1+ POLYCROMASIA</Val><Val description="">ATYPICAL LYMPHS CONFIRMED ON SMEAR</Val><Val description="">CLOT</Val><Val description="">DELETED</Val><Val description="">DONE AT BWH CLIN LABS, BOSTON</Val><Val description="">HOWELL JOLLY BODIES SEEN</Val><Val description="">RBC MORPHOLOGY, RARE TARGET CELLS, 1+ POLYCHROMASIA, 1+ ELIPTOCYTES,1+ OVALOCYTES</Val><Val description="">TEAR DROPS SEEN</Val><Val description="">TEST ENTRY</Val><Val description="">U</Val><Val description="">UNS</Val><Val description="">VERY RARE SCHISTO SEEN ON SCAN AS REQUESTED</Val><Val description="">YELLOW</Val><Val description="">0-1</Val><Val description="">0-1+</Val><Val description="">1-2+</Val><Val description="">2+-3+</Val><Val description="">2-3+</Val><Val description="">3-4+</Val><Val description="NEGATIVE">NEG</Val><Val description="">OCC</Val><Val description="">OCC.</Val><Val description="">OCC-1+</Val><<Val description="">1+ MICROCYTOSIS</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UAS-YEAS\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:03</CreationDateTime><TestID>UAS-YEAS</TestID><TestName>Yeast</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5822-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">FEW</Val><Val description="">MANY</Val><Val description="">MODERATE</Val><Val description="">NP</Val><Val description="">CAN</Val><Val description="">MOD</Val><Val description="">RARE</Val><Val description="">MARKED</Val><Val description="">NONE</Val><Val description="">ABUND</Val><Val description="">ABUND. BUDDING YEAST</Val><Val description="">FEW BUDDING YEAST<Val description="">FEW-MODERATE</Val><Val description="">MOD.</Val><Val description="">TNTC</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UA-WBC\\LOINC:20455-2\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:22:41</CreationDateTime><TestID>UA-WBC</TestID><TestName>WBC Screen</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5799-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+</Val><Val description="">1-2+</Val><Val description="">2+</Val><Val description="">2++</Val><Val description="">3+</Val><Val description="NEGATIVE">NEG</Val><Val description="NEGATIVE">NEGATIVE</Val><Val description="">NREG</Val><Val description="POSITIVE">POS</Val><Val description="">POSIIVE</Val><Val description="">POSITICE</Val><Val description="">POSITIVE</Val><Val description="">SL TRACE</Val><Val description="">SL.POSITIVE</Val>/EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB60) Smear Morphology\\ANISO\\LOINC:15150-6\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>11/18/2005 14:53:43</CreationDateTime><TestID>ANISO</TestID><TestName>Anisocytosis</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>702-1</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>N</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+</Val><Val description="">2+</Val><Val description="">TRACE</Val><Val description="">+</Val><Val description="">++</Val><Val description="">+++</Val><Val description="">NP</Val><Val description="">TEST NOT PERFORMED</Val><Val description="">3+</Val><Val description="">4+</Val><Val description="">CREDIT</Val><Val description="">NONE</Val><Val description="">0-4 SCHISTO`S OR HELMET CELLS/OIF</Val><Val description="">1+ SICKLE CELLS</Val><Val description="">1+ TARGET, SOME TEARDROP, 1+ POLYCROMASIA</Val><Val description="">ATYPICAL LYMPHS CONFIRMED ON SMEAR</Val><Val description="">CLOT</Val><Val description="">DELETED</Val><Val description="">DONE AT BWH CLIN LABS, BOSTON</Val><Val description="">HOWELL JOLLY BODIES SEEN</Val><Val description="">RBC MORPHOLOGY, RARE TARGET CELLS, 1+ POLYCHROMASIA, 1+ ELIPTOCYTES,1+ OVALOCYTES</Val><Val description="">TEAR DROPS SEEN</Val><Val description="">TEST ENTRY</Val><Val description="">U</Val><Val description="">UNS</Val><Val description="">VERY RARE SCHISTO SEEN ON SCAN AS REQUESTED</Val><Val description="">YELLOW</Val><Val description="">0-1</Val><Val description="">0-1+</Val><Val description="">1-2+</Val><Val description="">2+-3+</Val><Val description="">2-3+</Val><Val description="">3-4+</Val><Val description="NEGATIVE">NEG</Val><Val description="">OCC</Val><Val description="">OCC.</Val><Val description="">OCC-1+</Val><<Val description="">1+ MICROCYTOSIS</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB59) Other Hematology\\OFRAG\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:10</CreationDateTime><TestID>OFRAG</TestID><TestName>Osmotic Fragility</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>4666-4</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength>0</MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">.00% NACL 100% HEMOLYSIS</Val><Val description="">CURVE INDICATES SPHEROCYTOSIS.</Val><Val description="">CURVE WITHIN NORMAL LIMITS</Val><Val description="">NORMAL</Val><Val description="">NORMAL CURVE.</Val><Val description="">POSITIVE FOR SPHEROCYTOSIS.<Val description="">ABNORMAL</Val><Val description="">CR</Val><Val description="">REF</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB59) Other Hematology\\OFRAG\\LOINC:32863-3\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:10</CreationDateTime><TestID>OFRAG</TestID><TestName>Osmotic Fragility</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>4666-4</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength>0</MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">.00% NACL 100% HEMOLYSIS</Val><Val description="">CURVE INDICATES SPHEROCYTOSIS.</Val><Val description="">CURVE WITHIN NORMAL LIMITS</Val><Val description="">NORMAL</Val><Val description="">NORMAL CURVE.</Val><Val description="">POSITIVE FOR SPHEROCYTOSIS.<Val description="">ABNORMAL</Val><Val description="">CR</Val><Val description="">REF</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB6) Coagulation\\(LLB14) Routine Coagulation\\PT\\LOINC:5902-2\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:22:34</CreationDateTime><TestID>PT</TestID><TestName>PT</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5902-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues></Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">14.8/11.0</Val><Val description="">15.1/11.0</Val><Val description="">15.3/11.0</Val><Val description="">15.4/11.0</Val><Val description="">15.7/11.0</Val><Val description="">15.9/11.0</Val><Val description="">16.3/11.0</Val><Val description="">16.4/11.0</Val><Val description="">16.6/11.0</Val><Val description="">16.7/11.0</Val><Val description="">16.9/11.0</Val><Val description="">17.1/11.0</Val><Val description="">17.2/11.0</Val><Val description="">17.3/11.0</Val><Val description="">17.5/11.0</Val><Val description="">17.6/11.0</Val><Val description="">17.7/11.0</Val><Val description="">17.8/11.0</Val><Val description="">17.9/11.0</Val><Val description="">18.2/11.0</Val><Val description="">10.0/10.6</Val><Val description="">10.0/10.7</Val><Val description="">10.0/10.8</Val><Val description="">10.1/10.6</Val><Val description="">10.1/10.7</Val><Val description="">10.2/10.6</Val>/EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits>seconds</NormalUnits><NormalUnits>sec/ctl</NormalUnits><EqualUnits>seconds</EqualUnits><EqualUnits>sec/ctl</EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB53) Hematology\\(LLB59) Other Hematology\\OFRAG\\LOINC:4666-4\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:10</CreationDateTime><TestID>OFRAG</TestID><TestName>Osmotic Fragility</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>4666-4</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength>0</MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">.00% NACL 100% HEMOLYSIS</Val><Val description="">CURVE INDICATES SPHEROCYTOSIS.</Val><Val description="">CURVE WITHIN NORMAL LIMITS</Val><Val description="">NORMAL</Val><Val description="">NORMAL CURVE.</Val><Val description="">POSITIVE FOR SPHEROCYTOSIS.<Val description="">ABNORMAL</Val><Val description="">CR</Val><Val description="">REF</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UAS-YEAS\\LOINC:5822-2\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:23:03</CreationDateTime><TestID>UAS-YEAS</TestID><TestName>Yeast</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5822-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">FEW</Val><Val description="">MANY</Val><Val description="">MODERATE</Val><Val description="">NP</Val><Val description="">CAN</Val><Val description="">MOD</Val><Val description="">RARE</Val><Val description="">MARKED</Val><Val description="">NONE</Val><Val description="">ABUND</Val><Val description="">ABUND. BUDDING YEAST</Val><Val description="">FEW BUDDING YEAST<Val description="">FEW-MODERATE</Val><Val description="">MOD.</Val><Val description="">TNTC</Val></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB6) Coagulation\\(LLB14) Routine Coagulation\\PT\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:22:34</CreationDateTime><TestID>PT</TestID><TestName>PT</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5902-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues></Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">14.8/11.0</Val><Val description="">15.1/11.0</Val><Val description="">15.3/11.0</Val><Val description="">15.4/11.0</Val><Val description="">15.7/11.0</Val><Val description="">15.9/11.0</Val><Val description="">16.3/11.0</Val><Val description="">16.4/11.0</Val><Val description="">16.6/11.0</Val><Val description="">16.7/11.0</Val><Val description="">16.9/11.0</Val><Val description="">17.1/11.0</Val><Val description="">17.2/11.0</Val><Val description="">17.3/11.0</Val><Val description="">17.5/11.0</Val><Val description="">17.6/11.0</Val><Val description="">17.7/11.0</Val><Val description="">17.8/11.0</Val><Val description="">17.9/11.0</Val><Val description="">18.2/11.0</Val><Val description="">10.0/10.6</Val><Val description="">10.0/10.7</Val><Val description="">10.0/10.8</Val><Val description="">10.1/10.6</Val><Val description="">10.1/10.7</Val><Val description="">10.2/10.6</Val>/EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits>seconds</NormalUnits><NormalUnits>sec/ctl</NormalUnits><EqualUnits>seconds</EqualUnits><EqualUnits>sec/ctl</EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>

Error parsing XML for : \\\\i2b2_LABS\\i2b2\\Labtests\\LAB\\(LLB48) Urinalysis\\(LLB49) Urinalysis\\UA-WBC\\ <?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>04/15/2007 01:22:41</CreationDateTime><TestID>UA-WBC</TestID><TestName>WBC Screen</TestName><DataType>Enum</DataType><CodeType>GRP</CodeType><Loinc>5799-2</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues>Y</Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue></LowofLowValue><HighofLowValue></HighofLowValue><LowofHighValue></LowofHighValue><HighofHighValue></HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues><Val description="">1+</Val><Val description="">1-2+</Val><Val description="">2+</Val><Val description="">2++</Val><Val description="">3+</Val><Val description="NEGATIVE">NEG</Val><Val description="NEGATIVE">NEGATIVE</Val><Val description="">NREG</Val><Val description="POSITIVE">POS</Val><Val description="">POSIIVE</Val><Val description="">POSITICE</Val><Val description="">POSITIVE</Val><Val description="">SL TRACE</Val><Val description="">SL.POSITIVE</Val>/EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits></NormalUnits><EqualUnits></EqualUnits><ExcludingUnits></ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>



 Comments   
Comment by Lori Phillips [ 04/Jun/14 ]
Looked at this briefly, problem is that some of the <Val> entries appear as <<Val> ; should be easy editor fix in the sql insert files. -lcp5
Comment by Janice Donahoe [ 05/Jun/14 ]
Simple edit of the insert sql files. Changed <<Val> to <Val>
Load of metadata Lab test files should be verified. (Lori Phillips)
Comment by Tom Morris [ 06/Jun/14 ]
Any hand edited XML is going to be error prone. Perhaps it would be worth adding a test which extracts and validates all the XML snippets. Only a small number of terms have XML, so it should run pretty quickly.
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